(38 nodes) Periplasmic binding protein-like I network (Streptomyces alboflavus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMD44_04498	Unannotated protein. (527 aa)
	lacI-5	Unannotated protein. (345 aa)
	lacI-6	Unannotated protein. (354 aa)
	SMD44_02450	Unannotated protein. (255 aa)
	SMD44_01868	Unannotated protein. (421 aa)
	SMD44_01697	Unannotated protein. (344 aa)
	lacI	Unannotated protein. (314 aa)
	SMD44_08478	Unannotated protein. (367 aa)
	rbsB	Unannotated protein. (351 aa)
	SMD44_00322	Unannotated protein. (330 aa)
	SMD44_00200	Unannotated protein. (370 aa)
	SMD44_01122	Unannotated protein. (351 aa)
	SMD44_01127	Unannotated protein. (262 aa)
	SMD44_06600	Unannotated protein. (351 aa)
	xylF	Unannotated protein. (365 aa)
	SMD44_04271	Unannotated protein. (365 aa)
	SMD44_07903	Unannotated protein. (344 aa)
	SMD44_07742	Unannotated protein. (361 aa)
	SMD44_07188	Unannotated protein. (539 aa)
	rbsB-2	Unannotated protein. (347 aa)
	lacI-2	Unannotated protein. (361 aa)
	rbsB-3	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. (657 aa)
	lacI-3	Unannotated protein. (350 aa)
	SMD44_03094	Unannotated protein. (351 aa)
	lacI-4	Unannotated protein. (334 aa)
	SMD44_00675	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. (368 aa)
	rbsB-4	Unannotated protein. (415 aa)
	SMD44_06894	Unannotated protein. (327 aa)
	SMD44_06893	Unannotated protein. (329 aa)
	SMD44_07247	Unannotated protein. (365 aa)
	rbsB-5	Unannotated protein. (360 aa)
	SMD44_07659	Unannotated protein. (342 aa)
	SMD44_07643	Unannotated protein. (337 aa)
	rbsB-6	Unannotated protein. (374 aa)
	SMD44_03728	Unannotated protein. (461 aa)
	livK	Unannotated protein. (411 aa)
	SMD44_05483	Unannotated protein. (350 aa)
	bmpA	Unannotated protein. (349 aa)

Your Current Organism:

Streptomyces alboflavus

NCBI taxonomy Id: 67267
Other names: ATCC 12626, ATCC 23874, Actinomyces alboflavus, BCRC 13664, CBS 613.68, CCRC 13664, CCRC:13664, CIP 104427, DSM 40045, IFO 13196, IMET 42936, ISP 5045, JCM 4615, KCTC 9674, NBRC 13196, NRRL B-2373, NRRL-ISP 5045, S. alboflavus, Streptomyces albiflavus, VKM Ac-972

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Export your current network:

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... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMD44_00322	rbsB-6	GCA_000716675_00780	GCA_000716675_04401	Unannotated protein.	Unannotated protein.	0.401
SMD44_00675	SMD44_06893	GCA_000716675_02729	GCA_000716675_03614	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.571
SMD44_00675	SMD44_06894	GCA_000716675_02729	GCA_000716675_03613	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.571
SMD44_00675	SMD44_08478	GCA_000716675_02729	GCA_000716675_00460	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.531
SMD44_00675	rbsB	GCA_000716675_02729	GCA_000716675_00766	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.976
SMD44_00675	rbsB-2	GCA_000716675_02729	GCA_000716675_02372	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.971
SMD44_00675	rbsB-3	GCA_000716675_02729	GCA_000716675_02421	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	0.847
SMD44_00675	rbsB-4	GCA_000716675_02729	GCA_000716675_02730	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.996
SMD44_00675	rbsB-5	GCA_000716675_02729	GCA_000716675_04371	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.974
SMD44_00675	rbsB-6	GCA_000716675_02729	GCA_000716675_04401	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.892
SMD44_00675	xylF	GCA_000716675_02729	GCA_000716675_01473	Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.	Unannotated protein.	0.719
SMD44_01127	SMD44_06600	GCA_000716675_01158	GCA_000716675_01448	Unannotated protein.	Unannotated protein.	0.763
SMD44_01127	SMD44_07742	GCA_000716675_01158	GCA_000716675_01884	Unannotated protein.	Unannotated protein.	0.763
SMD44_01868	SMD44_03728	GCA_000716675_00049	GCA_000716675_05110	Unannotated protein.	Unannotated protein.	0.741
SMD44_02450	SMD44_06600	GCA_000716675_07715	GCA_000716675_01448	Unannotated protein.	Unannotated protein.	0.766
SMD44_03728	SMD44_01868	GCA_000716675_05110	GCA_000716675_00049	Unannotated protein.	Unannotated protein.	0.741
SMD44_05483	bmpA	GCA_000716675_06627	GCA_000716675_06628	Unannotated protein.	Unannotated protein.	0.938
SMD44_06600	SMD44_01127	GCA_000716675_01448	GCA_000716675_01158	Unannotated protein.	Unannotated protein.	0.763
SMD44_06600	SMD44_02450	GCA_000716675_01448	GCA_000716675_07715	Unannotated protein.	Unannotated protein.	0.766
SMD44_06600	SMD44_07659	GCA_000716675_01448	GCA_000716675_04382	Unannotated protein.	Unannotated protein.	0.770

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