(23 nodes) O-Antigen nucleotide sugar biosynthesis, and Glycosyl transferases group 1 network (Comamonas terrae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001544075_00094	Unannotated protein. (285 aa)
	GCA_001544075_01957	Unannotated protein. (360 aa)
	GCA_001544075_01958	Unannotated protein. (298 aa)
	GCA_001544075_01959	Unannotated protein. (295 aa)
	GCA_001544075_01960	Unannotated protein. (185 aa)
	GCA_001544075_01970	Unannotated protein. (481 aa)
	GCA_001544075_01971	Unannotated protein. (368 aa)
	GCA_001544075_01972	Unannotated protein. (325 aa)
	GCA_001544075_01973	Unannotated protein. (376 aa)
	GCA_001544075_01974	Unannotated protein. (665 aa)
	GCA_001544075_01975	Unannotated protein. (428 aa)
	GCA_001544075_01976	Unannotated protein. (347 aa)
	GCA_001544075_01977	Unannotated protein. (383 aa)
	GCA_001544075_01978	Unannotated protein. (109 aa)
	GCA_001544075_01980	Unannotated protein. (391 aa)
	GCA_001544075_01981	Unannotated protein. (662 aa)
	GCA_001544075_02169	Unannotated protein. (294 aa)
	GCA_001544075_02624	Unannotated protein. (462 aa)
	GCA_001544075_02932	Unannotated protein. (638 aa)
	GCA_001544075_02936	Unannotated protein. (467 aa)
	GCA_001544075_03146	Unannotated protein. (447 aa)
	GCA_001544075_04000	Unannotated protein. (390 aa)
	GCA_001544075_04001	Unannotated protein. (341 aa)

Your Current Organism:

Comamonas terrae

NCBI taxonomy Id: 673548
Other names: C. terrae, Comamonas sp. A3-3, Comamonas terrae Chitpirom et al. 2012, NBRC 106524, strain A3-3

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001544075_00094	GCA_001544075_01957	Unannotated protein.	Unannotated protein.	0.546
GCA_001544075_00094	GCA_001544075_01959	Unannotated protein.	Unannotated protein.	0.547
GCA_001544075_00094	GCA_001544075_01960	Unannotated protein.	Unannotated protein.	0.404
GCA_001544075_00094	GCA_001544075_01978	Unannotated protein.	Unannotated protein.	0.661
GCA_001544075_00094	GCA_001544075_01981	Unannotated protein.	Unannotated protein.	0.440
GCA_001544075_00094	GCA_001544075_02169	Unannotated protein.	Unannotated protein.	0.625
GCA_001544075_00094	GCA_001544075_04000	Unannotated protein.	Unannotated protein.	0.410
GCA_001544075_01957	GCA_001544075_00094	Unannotated protein.	Unannotated protein.	0.546
GCA_001544075_01957	GCA_001544075_01958	Unannotated protein.	Unannotated protein.	0.998
GCA_001544075_01957	GCA_001544075_01959	Unannotated protein.	Unannotated protein.	0.999
GCA_001544075_01957	GCA_001544075_01960	Unannotated protein.	Unannotated protein.	0.999
GCA_001544075_01957	GCA_001544075_01970	Unannotated protein.	Unannotated protein.	0.944
GCA_001544075_01957	GCA_001544075_01971	Unannotated protein.	Unannotated protein.	0.530
GCA_001544075_01957	GCA_001544075_01973	Unannotated protein.	Unannotated protein.	0.530
GCA_001544075_01957	GCA_001544075_01975	Unannotated protein.	Unannotated protein.	0.753
GCA_001544075_01957	GCA_001544075_01976	Unannotated protein.	Unannotated protein.	0.766
GCA_001544075_01957	GCA_001544075_01977	Unannotated protein.	Unannotated protein.	0.530
GCA_001544075_01957	GCA_001544075_01978	Unannotated protein.	Unannotated protein.	0.647
GCA_001544075_01957	GCA_001544075_01980	Unannotated protein.	Unannotated protein.	0.884
GCA_001544075_01957	GCA_001544075_01981	Unannotated protein.	Unannotated protein.	0.431