(13 nodes) Pentose and glucuronate interconversions network (Comamonas terrae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001544075_03708	Unannotated protein. (553 aa)
	GCA_001544075_02984	Unannotated protein. (257 aa)
	GCA_001544075_02906	Unannotated protein. (433 aa)
	GCA_001544075_02782	Unannotated protein. (263 aa)
	GCA_001544075_02735	Unannotated protein. (268 aa)
	GCA_001544075_02169	Unannotated protein. (294 aa)
	GCA_001544075_02084	Unannotated protein. (511 aa)
	GCA_001544075_01748	Unannotated protein. (227 aa)
	GCA_001544075_01680	Unannotated protein. (316 aa)
	GCA_001544075_01672	Unannotated protein. (482 aa)
	GCA_001544075_00864	Unannotated protein. (227 aa)
	GCA_001544075_00357	Unannotated protein. (439 aa)
	GCA_001544075_04000	Unannotated protein. (390 aa)

Your Current Organism:

Comamonas terrae

NCBI taxonomy Id: 673548
Other names: C. terrae, Comamonas sp. A3-3, Comamonas terrae Chitpirom et al. 2012, NBRC 106524, strain A3-3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001544075_01680	GCA_001544075_02084	Unannotated protein.	Unannotated protein.	0.453
GCA_001544075_01748	GCA_001544075_02782	Unannotated protein.	Unannotated protein.	0.736
GCA_001544075_01748	GCA_001544075_02984	Unannotated protein.	Unannotated protein.	0.736
GCA_001544075_02084	GCA_001544075_01680	Unannotated protein.	Unannotated protein.	0.453
GCA_001544075_02169	GCA_001544075_04000	Unannotated protein.	Unannotated protein.	0.934
GCA_001544075_02782	GCA_001544075_01748	Unannotated protein.	Unannotated protein.	0.736
GCA_001544075_02984	GCA_001544075_01748	Unannotated protein.	Unannotated protein.	0.736
GCA_001544075_04000	GCA_001544075_02169	Unannotated protein.	Unannotated protein.	0.934