STRINGSTRING
VM_09240 VM_09240 VM_09245 VM_09245 VM_09250 VM_09250 VM_09255 VM_09255 VM_09260 VM_09260 VM_09265 VM_09265 VM_09270 VM_09270 VM_09280 VM_09280 VM_17335 VM_17335 VM_18785 VM_18785 VM_18790 VM_18790 VM_18795 VM_18795 VM_18800 VM_18800 VM_18815 VM_18815
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VM_09240Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
VM_09245Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
VM_09250Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
VM_09255Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
VM_09260FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
VM_09265Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
VM_09270Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
VM_09280Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (56 aa)
VM_17335Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)
VM_18785Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
VM_18790Deoxyribodipyrimidine photo-lyase; UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family. (469 aa)
VM_18795Helix-turn-helix-type transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
VM_18800Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
VM_18815Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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