STRINGSTRING
VM_09250 VM_09250 VM_09255 VM_09255 VM_09260 VM_09260 VM_09265 VM_09265 VM_09270 VM_09270
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VM_09250Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
VM_09255Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
VM_09260FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
VM_09265Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
VM_09270Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.