(6 nodes) Bacterial flagellin C-terminal helical region network (Vibrio mimicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VM_04235	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (378 aa)
	VM_19830	Lateral flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (289 aa)
	VM_03930	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (379 aa)
	VM_03935	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (377 aa)
	VM_04240	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (377 aa)
	VM_04245	Flagellin B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (376 aa)

Your Current Organism:

Vibrio mimicus

NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
VM_04235	VM_04240	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.469
VM_04240	VM_04235	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.469
VM_04240	VM_04245	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.436
VM_04245	VM_04240	Flagellin B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.436