(112 nodes) Mixed, incl. Polycyclic aromatic hydrocarbon degradation, and Lignin metabolic process network (Rhodoplanes sp. Z2YC6860)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMN38475.1	Protocatechuate 4,5-dioxygenase subunit alpha. (113 aa)
	AMN38476.1	Protocatechuate 4,5-dioxygenase subunit beta. (286 aa)
	AMN38477.1	Rieske (2Fe-2S) protein. (428 aa)
	AMN38536.1	4-hydroxybenzoate 3-monooxygenase. (391 aa)
	AMN38598.1	Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase. (255 aa)
	AMN38602.1	3-chlorobenzoate-3,4-dioxygenase oxygenase subunit. (427 aa)
	AMN38680.1	4,5-dihydroxyphthalate decarboxylase. (330 aa)
	AMN38920.1	NUDIX hydrolase. (245 aa)
	AMN38921.1	L-malyl-CoA/beta-methylmalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (293 aa)
	AMN38922.1	Amino acid ABC transporter substrate-binding protein. (267 aa)
	AMN38985.1	HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (274 aa)
	AMN39162.1	Flavin reductase domain-containing FMN-binding protein. (215 aa)
	AMN39163.1	Extra-cytoplasmic solute receptors (bug family). (369 aa)
	AMN39229.1	Transcriptional regulator, GntR family/amidohydrolase family protein. (295 aa)
	AMN39280.1	Dihydroxyphthalate decarboxylase. (332 aa)
	AMN39307.1	Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase. (239 aa)
	AMN39333.1	Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase. (268 aa)
	AMN39377.1	Alpha/beta hydrolase fold protein. (313 aa)
	AMN39417.1	GntR family transcriptional regulator. (307 aa)
	AMN39436.1	Rieske (2Fe-2S) domain-containing protein. (428 aa)
	AMN39437.1	Oxidoreductase domain-containing protein. (375 aa)
	AMN39476.1	2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase. (532 aa)
	AMN39477.1	Carboxymuconolactone decarboxylase. (181 aa)
	AMN39478.1	Glucose-methanol-choline oxidoreductase. (543 aa)
	AMN39479.1	Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase. (239 aa)
	AMN39480.1	Methylthioribulose-1-phosphate dehydratase. (227 aa)
	AMN39485.1	Type 11 methyltransferase. (514 aa)
	AMN39487.1	4,5-dihydroxyphthalate decarboxylase. (330 aa)
	AMN39502.1	4,5-dihydroxyphthalate decarboxylase. (328 aa)
	AMN39508.1	Extra-cytoplasmic solute receptor. (330 aa)
	AMN39509.1	4,5-dihydroxyphthalate decarboxylase. (330 aa)
	AMN39576.1	Dehydrogenase. (398 aa)
	AMN39581.1	Efflux RND transporter protein. (342 aa)
	AMN39594.1	LVIVD repeat family protein. (451 aa)
	AMN39601.1	Amidohydrolase 2. (287 aa)
	AMN39611.1	Homoserine dehydrogenase. (449 aa)
	AMN39801.1	Permease. (186 aa)
	AMN39802.1	Permease. (164 aa)
	AMN39842.1	Amidohydrolase 2. (286 aa)
	AMN39853.1	Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase. (254 aa)
	AMN40084.1	Permease. (253 aa)
	AMN40092.1	Transcriptional regulator, GntR family/amidohydrolase family protein. (299 aa)
	AMN40119.1	Transposase IS116/IS110/IS902 family protein. (310 aa)
	AMN40121.1	Tripartite tricarboxylate transporter family receptor. (339 aa)
	AMN40258.1	Efflux RND transporter protein. (344 aa)
	AMN40426.1	Amidohydrolase. (287 aa)
	AMN40540.1	ABC transporter substrate-binding protein. (323 aa)
	AMN40541.1	Hypothetical protein. (142 aa)
	AMN40542.1	Cupin 2 barrel domain-containing protein. (111 aa)
	AMN40543.1	Amidohydrolase. (298 aa)
	AMN40596.1	Rieske (2Fe-2S) domain-containing protein. (431 aa)
	AMN40878.1	Pathogenesis associated protein Pep2. (202 aa)
	AMN40937.1	Amidohydrolase 2. (287 aa)
	AMN41187.1	Tripartite tricarboxylate transporter family receptor. (346 aa)
	AMN41188.1	4,5-dihydroxyphthalate decarboxylase. (329 aa)
	AMN41189.1	Acyltransferase 3. (287 aa)
	AMN41269.1	SH3 type 3 domain-containing protein. (320 aa)
	AMN41270.1	Extra-cytoplasmic solute receptor. (323 aa)
	AMN41271.1	Extradiol ring-cleavage dioxygenase III subunit B. (304 aa)
	AMN41272.1	Extradiol ring-cleavage dioxygenase LigAB, LigA subunit. (107 aa)
	AMN41273.1	Zinc-dependent hydroxylase. (301 aa)
	AMN41274.1	Extra-cytoplasmic solute receptor. (319 aa)
	AMN41277.1	Hypothetical protein. (139 aa)
	AMN41441.1	Amidohydrolase 2. (324 aa)
	AMN41459.1	Extra-cytoplasmic solute receptor. (365 aa)
	AMN41460.1	4,5-dihydroxyphthalate decarboxylase. (327 aa)
	AMN41461.1	TIM-barrel fold metal-dependent hydrolase. (283 aa)
	AMN41465.1	Class II aldolase. (276 aa)
	AMN41645.1	TTT family tricarboxylate transporter, receptor protein. (321 aa)
	AMN41646.1	Protocatechuate 4,5-dioxygenase subunit beta. (328 aa)
	AMN41648.1	Alcohol dehydrogenase. (344 aa)
	AMN41652.1	Acyl carrier protein. (93 aa)
	rlpA	Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (115 aa)
	AMN41721.1	Dienelactone hydrolase. (264 aa)
	AMN41741.1	4,5-dihydroxyphthalate decarboxylase. (326 aa)
	AMN41742.1	Phosphoribosylaminoimidazole carboxylase. (294 aa)
	AMN41771.1	4,5-dihydroxyphthalate decarboxylase. (335 aa)
	AMN41774.1	Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase. (258 aa)
	AMN41775.1	Efflux RND transporter protein. (339 aa)
	AMN41782.1	Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase. (270 aa)
	AMN42762.1	p-Hydroxybenzoate hydroxylase, FAD dependent monooxygenase. (388 aa)
	AMN43107.1	Amidohydrolase 2. (282 aa)
	AMN43175.1	Dihydroxyphthalate decarboxylase. (322 aa)
	AMN43177.1	Hypothetical protein. (140 aa)
	AMN43544.1	TIM-barrel fold metal-dependent hydrolase. (283 aa)
	AMN43545.1	4,5-dihydroxyphthalate decarboxylase. (298 aa)
	AMN43799.1	Class II aldolase and adducin N-terminal domain-containing protein 4. (262 aa)
	AMN43817.1	4-oxalomesaconate hydratase. (342 aa)
	AMN43964.1	L-ribulose-5-phosphate 4-epimerase. (245 aa)
	AMN44003.1	4-hydroxy-4-methyl-2-oxoglutarate aldolase. (204 aa)
	AMN44226.1	PEP2-like protein. (196 aa)
	AMN44236.1	Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase. (233 aa)
	AMN44237.1	Tripartite tricarboxylate transporter family receptor. (343 aa)
	AMN44238.1	Phosphoglycerate mutase family protein. (179 aa)
	AMN44239.1	Tripartite tricarboxylate transporter family receptor. (338 aa)
	AMN44344.1	Ring-hydroxylating dioxygenase, large terminal subunit. (427 aa)
	AMN44357.1	Demethylmenaquinone methyltransferase. (228 aa)
	AMN44369.1	Extra-cytoplasmic solute receptor. (325 aa)
	AMN44370.1	4,5-dihydroxyphthalate decarboxylase. (323 aa)
	AMN44578.1	Transcriptional regulator, GntR family/amidohydrolase family. (311 aa)
	AMN44845.1	Hypothetical protein. (275 aa)
	AMN44961.1	NUDIX hydrolase. (160 aa)
	AMN44962.1	Class II aldolase/adducin-like protein. (263 aa)
	AMN45135.1	Amidohydrolase 2. (282 aa)
	AMN45235.1	4,5-dihydroxyphthalate decarboxylase. (329 aa)
	AMN45250.1	Demethylmenaquinone methyltransferase. (245 aa)
	AMN45391.1	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. (318 aa)
	AMN45392.1	Protocatechuate 4,5-dioxygenase subunit beta. (320 aa)
	AMN45393.1	Protocatechuate 4,5-dioxygenase subunit alpha. (155 aa)
	AMN45395.1	Amidohydrolase 2. (289 aa)
	AMN45403.1	4-hydroxybenzoyl-CoA thioesterase. (140 aa)
	AMN45407.1	benzoate-CoA ligase. (510 aa)

Your Current Organism:

Rhodoplanes sp. Z2YC6860

NCBI taxonomy Id: 674703
Other names: R. sp. Z2-YC6860, Rhodoplanes sp. Z2-YC6860

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMN38475.1	AMN38476.1	RHPLAN_00100	RHPLAN_00110	Protocatechuate 4,5-dioxygenase subunit alpha.	Protocatechuate 4,5-dioxygenase subunit beta.	0.995
AMN38475.1	AMN38477.1	RHPLAN_00100	RHPLAN_00120	Protocatechuate 4,5-dioxygenase subunit alpha.	Rieske (2Fe-2S) protein.	0.431
AMN38475.1	AMN38536.1	RHPLAN_00100	RHPLAN_00710	Protocatechuate 4,5-dioxygenase subunit alpha.	4-hydroxybenzoate 3-monooxygenase.	0.942
AMN38475.1	AMN38680.1	RHPLAN_00100	RHPLAN_02150	Protocatechuate 4,5-dioxygenase subunit alpha.	4,5-dihydroxyphthalate decarboxylase.	0.650
AMN38475.1	AMN39229.1	RHPLAN_00100	RHPLAN_07670	Protocatechuate 4,5-dioxygenase subunit alpha.	Transcriptional regulator, GntR family/amidohydrolase family protein.	0.906
AMN38475.1	AMN39280.1	RHPLAN_00100	RHPLAN_08180	Protocatechuate 4,5-dioxygenase subunit alpha.	Dihydroxyphthalate decarboxylase.	0.650
AMN38475.1	AMN39417.1	RHPLAN_00100	RHPLAN_09550	Protocatechuate 4,5-dioxygenase subunit alpha.	GntR family transcriptional regulator.	0.897
AMN38475.1	AMN39487.1	RHPLAN_00100	RHPLAN_10250	Protocatechuate 4,5-dioxygenase subunit alpha.	4,5-dihydroxyphthalate decarboxylase.	0.650
AMN38475.1	AMN39502.1	RHPLAN_00100	RHPLAN_10400	Protocatechuate 4,5-dioxygenase subunit alpha.	4,5-dihydroxyphthalate decarboxylase.	0.650
AMN38475.1	AMN39509.1	RHPLAN_00100	RHPLAN_10470	Protocatechuate 4,5-dioxygenase subunit alpha.	4,5-dihydroxyphthalate decarboxylase.	0.650
AMN38475.1	AMN39601.1	RHPLAN_00100	RHPLAN_11390	Protocatechuate 4,5-dioxygenase subunit alpha.	Amidohydrolase 2.	0.659
AMN38475.1	AMN39842.1	RHPLAN_00100	RHPLAN_13870	Protocatechuate 4,5-dioxygenase subunit alpha.	Amidohydrolase 2.	0.715
AMN38475.1	AMN40092.1	RHPLAN_00100	RHPLAN_16370	Protocatechuate 4,5-dioxygenase subunit alpha.	Transcriptional regulator, GntR family/amidohydrolase family protein.	0.740
AMN38475.1	AMN40426.1	RHPLAN_00100	RHPLAN_19760	Protocatechuate 4,5-dioxygenase subunit alpha.	Amidohydrolase.	0.911
AMN38475.1	AMN40543.1	RHPLAN_00100	RHPLAN_21030	Protocatechuate 4,5-dioxygenase subunit alpha.	Amidohydrolase.	0.658
AMN38475.1	AMN40937.1	RHPLAN_00100	RHPLAN_24990	Protocatechuate 4,5-dioxygenase subunit alpha.	Amidohydrolase 2.	0.901
AMN38475.1	AMN41188.1	RHPLAN_00100	RHPLAN_27510	Protocatechuate 4,5-dioxygenase subunit alpha.	4,5-dihydroxyphthalate decarboxylase.	0.650
AMN38475.1	AMN41271.1	RHPLAN_00100	RHPLAN_28340	Protocatechuate 4,5-dioxygenase subunit alpha.	Extradiol ring-cleavage dioxygenase III subunit B.	0.770
AMN38475.1	AMN41441.1	RHPLAN_00100	RHPLAN_30050	Protocatechuate 4,5-dioxygenase subunit alpha.	Amidohydrolase 2.	0.695
AMN38475.1	AMN41460.1	RHPLAN_00100	RHPLAN_30240	Protocatechuate 4,5-dioxygenase subunit alpha.	4,5-dihydroxyphthalate decarboxylase.	0.650