(7 nodes) Mixed, incl. Queuosine salvage, and Methyltransferase domain network (Stenotrophomonas panacihumi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KRG39161.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	KRG39162.1	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	KRG39163.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	KRG39164.1	Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. (257 aa)
	KRG40718.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
	KRG40719.1	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	KRG40734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)

Your Current Organism:

Stenotrophomonas panacihumi

NCBI taxonomy Id: 676599
Other names: JCM 16536, KCTC 22893, KEMB 9004-002, KEMB:9004-002, S. panacihumi, Stenotrophomonas sp. MK06, strain MK06

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRG39161.1	KRG39162.1	ARC20_01670	ARC20_01675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
KRG39161.1	KRG39163.1	ARC20_01670	ARC20_01680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
KRG39161.1	KRG39164.1	ARC20_01670	ARC20_01685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.	0.531
KRG39161.1	KRG40718.1	ARC20_01670	ARC20_12930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
KRG39162.1	KRG39161.1	ARC20_01675	ARC20_01670	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
KRG39162.1	KRG39163.1	ARC20_01675	ARC20_01680	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
KRG39162.1	KRG39164.1	ARC20_01675	ARC20_01685	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.	0.531
KRG39163.1	KRG39161.1	ARC20_01680	ARC20_01670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
KRG39163.1	KRG39162.1	ARC20_01680	ARC20_01675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
KRG39163.1	KRG39164.1	ARC20_01680	ARC20_01685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.	0.821
KRG39164.1	KRG39161.1	ARC20_01685	ARC20_01670	Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
KRG39164.1	KRG39162.1	ARC20_01685	ARC20_01675	Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.	PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
KRG39164.1	KRG39163.1	ARC20_01685	ARC20_01680	Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
KRG40718.1	KRG39161.1	ARC20_12930	ARC20_01670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
KRG40718.1	KRG40719.1	ARC20_12930	ARC20_12935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KRG40718.1	KRG40734.1	ARC20_12930	ARC20_12950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
KRG40719.1	KRG40718.1	ARC20_12935	ARC20_12930	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KRG40719.1	KRG40734.1	ARC20_12935	ARC20_12950	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KRG40734.1	KRG40718.1	ARC20_12950	ARC20_12930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
KRG40734.1	KRG40719.1	ARC20_12950	ARC20_12935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658