STRINGSTRING
RF55_1145 RF55_1145 RF55_25605 RF55_25605 RF55_24819 RF55_24819 RF55_24963 RF55_24963 RF55_24579 RF55_24579 RF55_21918 RF55_21918 RF55_21242 RF55_21242 RF55_21640 RF55_21640 RF55_20822 RF55_20822 RF55_20047 RF55_20047 RF55_19297 RF55_19297 RF55_17592 RF55_17592 RF55_15936 RF55_15936 RF55_15572 RF55_15572 RF55_15225 RF55_15225 RF55_14555 RF55_14555 RF55_14384 RF55_14384 RF55_13953 RF55_13953 RF55_13933 RF55_13933 RF55_13339 RF55_13339 RF55_13528 RF55_13528 RF55_13314 RF55_13314 RF55_13278 RF55_13278 RF55_12991 RF55_12991 RF55_12942 RF55_12942 RF55_12898 RF55_12898 RF55_12889 RF55_12889 RF55_12706 RF55_12706 RF55_12341 RF55_12341 RF55_11231 RF55_11231 RF55_11315 RF55_11315 RF55_10994 RF55_10994 RF55_10577 RF55_10577 RF55_10800 RF55_10800 RF55_10529 RF55_10529 RF55_10257 RF55_10257 RF55_10455 RF55_10455 RF55_10472 RF55_10472 RF55_10003 RF55_10003 RF55_10199 RF55_10199 RF55_9794 RF55_9794 RF55_9514 RF55_9514 RF55_9182 RF55_9182 RF55_9344 RF55_9344 RF55_9181 RF55_9181 RF55_8328 RF55_8328 RF55_7892 RF55_7892 RF55_7497 RF55_7497 RF55_7373 RF55_7373 RF55_7163 RF55_7163 RF55_7058 RF55_7058 RF55_6642 RF55_6642 RF55_6226 RF55_6226 RF55_6181 RF55_6181 RF55_5906 RF55_5906 RF55_5477 RF55_5477 RF55_5301 RF55_5301 RF55_5207 RF55_5207 RF55_5086 RF55_5086 RF55_4864 RF55_4864 RF55_4078 RF55_4078 RF55_3696 RF55_3696 RF55_3867 RF55_3867 RF55_3619 RF55_3619 RF55_2995 RF55_2995 RF55_1954 RF55_1954 RF55_1587 RF55_1587 RF55_1846 RF55_1846 RF55_1784 RF55_1784 RF55_1636 RF55_1636 RF55_1417 RF55_1417 RF55_1054 RF55_1054 RF55_603 RF55_603 RF55_446 RF55_446 RF55_153 RF55_153 RF55_23542 RF55_23542 RF55_21317 RF55_21317 RF55_19080 RF55_19080 RF55_14351 RF55_14351 RF55_12629 RF55_12629 RF55_11525 RF55_11525 RF55_10223 RF55_10223 RF55_9515 RF55_9515 RF55_7004 RF55_7004 RF55_6229 RF55_6229 RF55_2579 RF55_2579 RF55_2386 RF55_2386 RF55_2004 RF55_2004 RF55_642 RF55_642 RF55_406 RF55_406
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RF55_1145Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (454 aa)
RF55_25605Dna topoisomerase i. (207 aa)
RF55_24819Rcc1 and btb domain-containing protein 1. (91 aa)
RF55_24963Rcc1 and btb domain-containing protein 1. (139 aa)
RF55_24579Rcc1 and btb domain-containing protein 1. (93 aa)
RF55_21918Axoneme-associated protein. (355 aa)
RF55_21242Rcc1 and btb domain-containing protein 1. (129 aa)
RF55_21640Uncharacterized protein. (186 aa)
RF55_20822Poly. (106 aa)
RF55_20047Rcc1 and btb domain-containing protein 1. (72 aa)
RF55_19297Dna ligase 3. (124 aa)
RF55_17592Protein rmi1-like protein. (302 aa)
RF55_15936Rcc1 and btb domain-containing protein 1. (373 aa)
RF55_15572Replication protein a 70 kDa dna-binding subunit-like protein. (144 aa)
RF55_15225Polyubiquitin-b-like isoform 1 protein. (230 aa)
RF55_14555DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (970 aa)
RF55_14384Replication protein a 70 kDa dna-binding subunit. (139 aa)
RF55_13953Replication protein a 70 kDa dna-binding subunit. (105 aa)
RF55_13933Rcc1 and btb domain-containing protein. (133 aa)
RF55_13339Nad-dependent deacetylase sirtuin-7. (520 aa)
RF55_13528Recombinase a; Belongs to the RecA family. (354 aa)
RF55_13314Exonuclease 3-5 domain-containing protein 2-like protein. (300 aa)
RF55_13278Rcc1 and btb domain-containing protein 1-like protein. (565 aa)
RF55_12991Dna repair protein xrcc1-like protein. (486 aa)
RF55_12942Dna polymerase theta-like protein. (266 aa)
RF55_12898Rcc1 and btb domain-containing protein 1. (750 aa)
RF55_12889Lys-63-specific deubiquitinase brcc36-like protein. (208 aa)
RF55_12706Uncharacterized protein. (139 aa)
RF55_12341Ankyrin repeat domain-containing protein 12. (676 aa)
RF55_11231Rcc1 and btb domain-containing protein 1. (950 aa)
RF55_11315Cyclin-dependent kinase 2-like protein. (231 aa)
RF55_10994Brisc and brca1-a complex member 1-like protein. (341 aa)
RF55_10577Brca1-a complex subunit abraxas. (89 aa)
RF55_10800Serine-protein kinase atm; Belongs to the PI3/PI4-kinase family. (2034 aa)
RF55_10529Dna ligase 3. (272 aa)
RF55_10257Rcc1 and btb domain-containing protein 1. (539 aa)
RF55_10455Rcc1 and btb domain-containing protein 1. (754 aa)
RF55_10472Rcc1 and btb domain-containing protein 1-like protein. (553 aa)
RF55_10003Dna topoisomerase i. (1808 aa)
RF55_10199Atp-dependent dna helicase q4. (1536 aa)
RF55_9794Dna ligase 3. (158 aa)
RF55_9514Rcc1 and btb domain-containing protein 1. (169 aa)
RF55_9182Structure-specific endonuclease subunit slx4. (1388 aa)
RF55_9344Dna repair protein xrcc2. (275 aa)
RF55_9181Asparaginyl-trna cytoplasmic. (460 aa)
RF55_8328Cell cycle checkpoint protein rad17-like protein. (461 aa)
RF55_7892Ring finger protein 168. (878 aa)
RF55_7497Recombinase a; Belongs to the RecA family. (377 aa)
RF55_7373Dna polymerase theta-like protein. (1415 aa)
RF55_7163Breast cancer type 1 susceptibility protein. (1543 aa)
RF55_7058Dna repair protein rad50. (1352 aa)
RF55_6642Serine threonine-protein kinase grp-like protein; Belongs to the protein kinase superfamily. (472 aa)
RF55_6226Crossover junction endonuclease mus81. (365 aa)
RF55_6181Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (576 aa)
RF55_5906Serine-protein kinase atm. (671 aa)
RF55_5477Polyubiquitin-b-like isoform 1 protein. (231 aa)
RF55_5301Tumor suppressor p53-binding protein 1. (1320 aa)
RF55_5207Structure-specific endonuclease subunit slx1. (86 aa)
RF55_5086Dna topoisomerase 3-alpha. (347 aa)
RF55_4864Rcc1 and btb domain-containing protein 1. (607 aa)
RF55_4078Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (937 aa)
RF55_3696Polyubiquitin. (289 aa)
RF55_3867Dna topoisomerase 2-binding protein 1-like protein. (1242 aa)
RF55_3619Rcc1 and btb domain-containing protein 1-like protein. (319 aa)
RF55_2995Crossover junction endonuclease eme1-like protein. (405 aa)
RF55_1954Dna polymerase delta subunit 3-like protein. (471 aa)
RF55_1587Kxdl motif-containing protein. (153 aa)
RF55_1846Protein timeless-like protein. (464 aa)
RF55_1784Retinoblastoma-binding protein 8. (554 aa)
RF55_1636Sumo-conjugating enzyme ubc9. (360 aa)
RF55_1417Poly [ADP-ribose] polymerase. (987 aa)
RF55_1054Serine threonine-protein phosphatase 4 catalytic subunit. (185 aa)
RF55_603Tudor domain-containing protein 3. (614 aa)
RF55_446G2 mitotic-specific cyclin-a-like protein; Belongs to the cyclin family. (473 aa)
RF55_153DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. (340 aa)
RF55_23542Rna-directed dna. (310 aa)
RF55_21317Rcc1 and btb domain-containing protein 1. (169 aa)
RF55_19080Rcc1 and btb domain-containing protein 1. (394 aa)
RF55_14351Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
RF55_12629Rcc1 and btb domain-containing protein 1. (570 aa)
RF55_11525Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
RF55_10223Dna repair protein rad52-like protein. (257 aa)
RF55_9515Rcc1 and btb domain-containing protein 1. (677 aa)
RF55_7004TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (326 aa)
RF55_6229Brca1-a complex subunit bre-like protein. (186 aa)
RF55_2579Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (623 aa)
RF55_2386Breast cancer type 2 susceptibility protein. (1475 aa)
RF55_2004Serine threonine-protein phosphatase 4 regulatory subunit 2. (801 aa)
RF55_642Flap endonuclease 1-like protein. (363 aa)
RF55_406Protein timeless-like protein. (570 aa)
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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