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| | ARD40101.1 | Two-component system response regulator TorR; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa) |
| | nikR | Nickel-responsive transcriptional regulator NikR; Transcriptional repressor of the nikABCDE operon. Is active in the presence of excessive concentrations of intracellular nickel. (146 aa) |
| | ARD40059.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa) |
| | fur-2 | Transcriptional regulator Zur; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (157 aa) |
| | lexA | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. Binds to the 16 bp palindromic sequence 5'-CTGTATATATATACAG-3'. In the presence of single- stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (202 aa) |
| | dpiA | Response regulator; Regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa) |
| | dpiB | Histidine kinase; Regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa) |
| | rplA | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (234 aa) |
| | nusG | Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination. In the absence of Rho, increases the rate of transcription elongation by the RNA polymerase (RNAP), probably by partially suppressing pausing. In the presence of Rho, modulates most Rho-dependent termination events by interacting with the RNAP to render the complex more susceptible to the termination activity of Rho. May be required to overcome a kinetic limitation of Rho to function at certain terminators. Also involved in ribosomal RNA transcriptional ant [...] (181 aa) |
| | birA | biotin--[acetyl-CoA-carboxylase] synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. (319 aa) |
| | ARD39990.1 | YigZ family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa) |
| | rfaH | Transcription/translation regulatory transformer protein RfaH; Enhances distal genes transcription elongation in a specialized subset of operons that encode extracytoplasmic components. RfaH is recruited into a multi-component RNA polymerase complex by the ops element, which is a short conserved DNA sequence located downstream of the main promoter of these operons. Once bound, RfaH suppresses pausing and inhibits Rho-dependent and intrinsic termination at a subset of sites. Termination signals are bypassed, which allows complete synthesis of long RNA chains. (163 aa) |
| | B6E78_11820 | EamA family transporter; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa) |
| | ARD39967.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa) |
| | ARD39929.1 | Transcriptional regulator IlvY; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (298 aa) |
| | dnaA | Chromosomal replication initiation protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (467 aa) |
| | ARD39857.1 | Phosphate transport system regulatory protein PhoU; Part of the phosphate (Pho) regulon, which plays a key role in phosphate homeostasis. PhoU is essential for the repression of the Pho regulon at high phosphate conditions. (243 aa) |
| | ARD39839.1 | Transcriptional regulator AsnC; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa) |
| | ARD39829.1 | Transcriptional regulator RbsR; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa) |
| | ARD39827.1 | GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa) |
| | ntrC | Nitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (471 aa) |
| | ARD39813.1 | Two-component system sensor histidine kinase NtrB; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa) |
| | ARD39805.1 | TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa) |
| | ARD39795.1 | DNA-binding transcriptional regulator OxyR; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (307 aa) |
| | fabR | DNA-binding transcriptional regulator FabR; Represses the transcription of fabB, involved in unsaturated fatty acid (UFA) biosynthesis. By controlling UFA production, FabR directly influences the physical properties of the membrane bilayer. (223 aa) |
| | ARD39773.1 | Response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa) |
| | ARD40798.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (288 aa) |
| | ARD40757.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa) |
| | ARD40750.1 | Quinol dehydrogenase ferredoxin subunit NapH; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa) |
| | ARD40744.1 | Nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa) |
| | ARD40741.1 | ArsC family reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family. (127 aa) |
| | ARD40732.1 | Glycine cleavage system transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa) |
| | hda | DnaA regulatory inactivator Hda; Mediates the interaction of DNA replication inititator protein DnaA with DNA polymerase subunit beta sliding clamp (dnaN). Stimulates hydrolysis of ATP-DnaA to ADP-DnaA, rendering DnaA inactive for reinititation, a process called regulatory inhibition of DnaA or RIDA; Belongs to the DnaA family. HdA subfamily. (235 aa) |
| | phoR | PAS domain-containing sensor histidine kinase; Membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa) |
| | ARD40719.1 | Phosphate regulon transcriptional regulatory protein PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa) |
| | ARD40716.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa) |
| | ARD40706.1 | Two-component system response regulator BaeR; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa) |
| | B6E78_16140 | ISL3 family transposase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (314 aa) |
| | ARD40696.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa) |
| | ARD40688.1 | Cu(I)-responsive transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa) |
| | B6E78_15950 | IS5/IS1182 family transposase; Frameshifted; incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa) |
| | ARD40660.1 | DNA-binding transcriptional repressor AcrR; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa) |
| | ARD40650.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa) |
| | nusB | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (139 aa) |
| | metJ | Transcriptional repressor protein MetJ; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis; Belongs to the MetJ family. (106 aa) |
| | ARD39764.1 | DNA-binding transcriptional regulator CytR; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa) |
| | hslU | HslU--HslV peptidase ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (443 aa) |
| | rraA | Ribonuclease E activity regulator RraA; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities of the degradosome. (161 aa) |
| | ARD39753.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa) |
| | ARD39747.1 | AraC family transcriptional regulator; Involved in the thermoregulation of ompA, ompC, lamB and envelope proteins; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa) |
| | ARD39740.1 | Response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa) |
| | ARD40920.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (297 aa) |
| | ARD39717.1 | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa) |
| | rpoH | RNA polymerase factor sigma-32; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (284 aa) |
| | ARD39692.1 | XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa) |
| | ARD39679.1 | DeoR/GlpR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa) |
| | malT | Transcriptional regulator MalT; Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto- oligosaccharides. Specifically binds to the promoter region of its target genes, recognizing a short DNA motif called the MalT box. (892 aa) |
| | ARD39666.1 | cAMP-activated global transcriptional regulator CRP; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa) |
| | ARD39657.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa) |
| | greB | Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. (158 aa) |
| | ARD39648.1 | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa) |
| | ARD39616.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa) |
| | ARD39610.1 | Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa) |
| | fusA | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. (702 aa) |
| | tuf | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (394 aa) |
| | B6E78_09430 | Large-conductance mechanosensitive channel; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa) |
| | ARD39559.1 | 16S rRNA m5C967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (430 aa) |
| | ARD39541.1 | Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa) |
| | ARD39526.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (312 aa) |
| | fis | Fis family transcriptional regulator; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. (98 aa) |
| | ARD39508.1 | RNase E specificity factor CsrD; Derived by automated computational analysis using gene prediction method: Protein Homology. (630 aa) |
| | ARD39499.1 | Transcriptional regulator; For aaeXAB operon; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (306 aa) |
| | ARD39491.1 | selenocysteinyl-tRNA-specific translation elongation factor SelB; Derived by automated computational analysis using gene prediction method: Protein Homology. (625 aa) |
| | selA | L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis; Belongs to the SelA family. (463 aa) |
| | rraB | GNAT family N-acetyltransferase; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. (143 aa) |
| | ARD39436.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (320 aa) |
| | ARD39431.1 | CarD family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa) |
| | ARD39428.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (306 aa) |
| | ARD39420.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the histone-like protein H-NS family. (133 aa) |
| | argP | Chromosome initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family. (297 aa) |
| | ARD39375.1 | Rha family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa) |
| | ARD39373.1 | AlpA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (72 aa) |
| | ARD40902.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (327 aa) |
| | ARD39336.1 | Transcriptional regulator FhlA; Derived by automated computational analysis using gene prediction method: Protein Homology. (710 aa) |
| | ARD39318.1 | LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa) |
| | ARD39317.1 | Transcriptional regulator GalR; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa) |
| | rpoS | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (328 aa) |
| | recX | Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family. (146 aa) |
| | csrA | tRNA-Ser; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (61 aa) |
| | ARD39274.1 | Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa) |
| | ARD39271.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family. (244 aa) |
| | ARD39263.1 | Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily. (267 aa) |
| | iscR | Fe-S cluster assembly transcriptional regulator IscR; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins. (165 aa) |
| | nrdR | Hypothetical protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (149 aa) |
| | ARD40592.1 | N-acetylmannosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa) |
| | ARD40585.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (308 aa) |
| | ARD40953.1 | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa) |
| | ARD40544.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa) |
| | crl | Sigma factor-binding protein Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. (133 aa) |
| | ARD40507.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa) |
| | ARD40497.1 | aminoacyl-tRNA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa) |
| | ARD40494.1 | Rho-binding antiterminator; Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa) |
| | ARD40488.1 | Transcriptional regulator CadC; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa) |
| | ARD40458.1 | Transcriptional regulator GcvA; Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (315 aa) |
| | ARD40424.1 | DeoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa) |
| | ARD40420.1 | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa) |
| | ARD40410.1 | Transcriptional regulator PdhR; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa) |
| | yacG | DNA gyrase inhibitor YacG; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. (66 aa) |
| | secM | SecA regulator SecM; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family. (166 aa) |
| | mraZ | Division/cell wall cluster transcriptional repressor MraZ; Negatively regulates its own expression and that of the subsequent genes in the proximal part of the division and cell wall (dcw) gene cluster. Acts by binding directly to DNA. May also regulate the expression of genes outside the dcw cluster. (152 aa) |
| | ARD40383.1 | DNA-binding transcriptional regulator FruR; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa) |
| | rapA | RNA polymerase-binding ATPase; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. (968 aa) |
| | ARD40343.1 | Transcriptional activator NhaR; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (300 aa) |
| | B6E78_13950 | IS3 family transposase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa) |
| | ARD40310.1 | Right oriC-binding transcriptional activator; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa) |
| | trpR | Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region. (110 aa) |
| | ARD40305.1 | Energy-dependent translational throttle protein EttA; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa) |
| | ARD40296.1 | Glutamine amidotransferase; Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate; Belongs to the peptidase C56 family. (217 aa) |
| | ARD40295.1 | Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology. (778 aa) |
| | ARD40291.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (333 aa) |
| | ARD40264.1 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (491 aa) |
| | ARD40263.1 | Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa) |
| | rapZ | RNase adaptor protein RapZ; Modulates the synthesis of GlmS, by affecting the processing and stability of the regulatory small RNA GlmZ. When glucosamine-6- phosphate (GlcN6P) concentrations are high in the cell, RapZ binds GlmZ and targets it to cleavage by RNase E. Consequently, GlmZ is inactivated and unable to activate GlmS synthesis. Under low GlcN6P concentrations, RapZ is sequestered and inactivated by an other regulatory small RNA, GlmY, preventing GlmZ degradation and leading to synthesis of GlmS; Belongs to the RapZ-like family. RapZ subfamily. (283 aa) |
| | prfC | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (529 aa) |
| | rpoD | Double-stranded uracil-DNA glycosylase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (611 aa) |
| | ARD40221.1 | Two-component system response regulator QseB; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa) |
| | ARD40208.1 | Transcriptional regulator ExuR; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa) |
| | mzrA | Modulator protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR. (138 aa) |
| | infB | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (901 aa) |
| | nusA | Transcription termination protein NusA; Participates in both transcription termination and antitermination. (495 aa) |
| | greA | Serine-type D-Ala-D-Ala carboxypeptidase; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (158 aa) |
| | ARD40174.1 | Two-component system response regulator BasR; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa) |
| | argR-2 | Hypothetical protein; Regulates arginine biosynthesis genes. (156 aa) |
| | ARD40935.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa) |
| | ARD40143.1 | Transcriptional repressor NsrR; Negatively regulates the transcription of genes upregulated by nitrosative stress; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa) |
| | ARD40139.1 | Protease modulator HflC; HflC and HflK could regulate a protease. (334 aa) |
| | hfq | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (102 aa) |
| | efp | Elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. (188 aa) |
| | ARD40110.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa) |
| | argR | Arginine repressor; Regulates arginine biosynthesis genes. (152 aa) |
| | ARD40102.1 | TMAO reductase system periplasmic protein TorT; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa) |
| | ARD39231.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa) |
| | ARD39214.1 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa) |
| | ARD39211.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (292 aa) |
| | ARD39198.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa) |
| | ARD39173.1 | RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa) |
| | ARD39172.1 | Anti-sigma factor; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading [...] (212 aa) |
| | ARD39171.1 | sigma-E factor regulatory protein RseB; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa) |
| | lepA | Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (597 aa) |
| | ARD39137.1 | Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa) |
| | ARD39136.1 | Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa) |
| | aes | Acetylesterase; Displays esterase activity towards short chain fatty esters (acyl chain length of up to 8 carbons). Able to hydrolyze triacetylglycerol (triacetin) and tributyrylglycerol (tributyrin), but not trioleylglycerol (triolein) or cholesterol oleate. Negatively regulates MalT activity by antagonizing maltotriose binding. Inhibits MelA galactosidase activity. (323 aa) |
| | rsfS | Ribosome silencing factor RsfS; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (105 aa) |
| | fur | Transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (149 aa) |
| | ARD40888.1 | LexA regulated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa) |
| | seqA | Replication initiation regulator SeqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. (179 aa) |
| | ARD38032.1 | Anti-sigma-28 factor FlgM; Regulates the flagellar specific sigma28 transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa) |
| | ARD38049.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (299 aa) |
| | ARD38070.1 | Ribosome modulation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (57 aa) |
| | matP | Macrodomain Ter protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain. (152 aa) |
| | ARD38074.1 | Competence protein TfoX; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa) |
| | B6E78_00455 | Serine acetyltransferase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa) |
| | ARD38105.1 | LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa) |
| | flhD | Flagellar transcriptional activator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. (115 aa) |
| | flhC | Transcriptional activator FlhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family. (193 aa) |
| | ARD38128.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (307 aa) |
| | prfA | glutamyl-tRNA reductase; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (360 aa) |
| | B6E78_01175 | Dihydroneopterin triphosphate diphosphatase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa) |
| | ARD38208.1 | Transcriptional regulator HexR; Represses the expression of the zwf, eda, glp and gap; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa) |
| | fadR | Fatty acid metabolism transcriptional regulator FadR; Multifunctional regulator of fatty acid metabolism. (239 aa) |
| | rssB | Two-component system response regulator RssB; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. (352 aa) |
| | ARD38260.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the histone-like protein H-NS family. (135 aa) |
| | ARD38291.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa) |
| | B6E78_01745 | IS5/IS1182 family transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (324 aa) |
| | ARD38302.1 | Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa) |
| | ARD38312.1 | DNA-binding transcriptional regulator KdgR; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa) |
| | ARD38330.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa) |
| | ARD38341.1 | Transcriptional regulator MelR; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa) |
| | ARD38354.1 | Fe-S cluster assembly protein HesB; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa) |
| | ARD38380.1 | Phage shock protein operon transcriptional activator; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa) |
| | ARD38381.1 | Phage shock protein PspA; Involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa) |
| | ARD38387.1 | TyrR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa) |
| | ARD38403.1 | Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa) |
| | infC | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. (180 aa) |
| | ihfA | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (98 aa) |
| | ARD38472.1 | Transcriptional regulator FNR; Global transcription factor that controls the expression of over 100 target genes in response to anoxia; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa) |
| | ARD38475.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa) |
| | ARD38478.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa) |
| | ARD38498.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (313 aa) |
| | slyA | SlyA family transcriptional regulator; Transcription regulator that can specifically activate or repress expression of target genes; Belongs to the SlyA family. (143 aa) |
| | purR | Transcriptional repressor PurR; Is the main repressor of the genes involved in the de novo synthesis of purine nucleotides, regulating purB, purC, purEK, purF, purHD, purL, purMN and guaBA expression. PurR is allosterically activated to bind its cognate DNA by binding the purine corepressors, hypoxanthine or guanine, thereby effecting transcription repression. (341 aa) |
| | ARD38531.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (304 aa) |
| | B6E78_03190 | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa) |
| | putA | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. (1312 aa) |
| | B6E78_03295 | Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (306 aa) |
| | ARD38567.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa) |
| | ARD38587.1 | Two-component system sensor histidine kinase AtoS; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa) |
| | ARD38588.1 | DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa) |
| | B6E78_03785 | Excinuclease ABC subunit C; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa) |
| | ARD38634.1 | GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa) |
| | ARD38636.1 | Two-component system response regulator PhoP; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1153 aa) |
| | ARD38650.1 | GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa) |
| | ARD38654.1 | Translation initiation factor; Involved in start site selection during the initiation of translation; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa) |
| | lapB | Lipopolysaccharide assembly protein LapB; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family. (389 aa) |
| | fliA | RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (240 aa) |
| | ARD38728.1 | Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa) |
| | ARD38729.1 | Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa) |
| | ihfB | Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (94 aa) |
| | ARD38743.1 | TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa) |
| | ARD38759.1 | Leucine-responsive transcriptional regulator; Mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa) |
| | infA | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (72 aa) |
| | ARD38767.1 | Cold shock domain protein CspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa) |
| | B6E78_04635 | DEAD/DEAH box helicase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa) |
| | ARD38777.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (295 aa) |
| | ARD38799.1 | DNA-binding transcriptional repressor DeoR; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa) |
| | ARD38804.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa) |
| | ARD38822.1 | Elongation factor P-like protein YeiP; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the elongation factor P family. (190 aa) |
| | ARD38827.1 | GntR family transcriptional regulator; Regulates the expression of uxuBA; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa) |
| | ARD38850.1 | TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa) |
| | ARD38851.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa) |
| | rcsB | DNA-binding response regulator; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions. (217 aa) |
| | rcsC | Two-component system sensor histidine kinase/response regulator; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (956 aa) |
| | ARD38903.1 | Transcriptional regulator LrhA; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa) |
| | ARD38947.1 | Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa) |
| | ARD38976.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa) |
| | ARD38984.1 | AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa) |
| | eco | Ecotin; General inhibitor of pancreatic serine proteases: inhibits chymotrypsin, trypsin, elastases, factor X, kallikrein as well as a variety of other proteases. (167 aa) |
| | ARD38987.1 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (300 aa) |
| | ARD39005.1 | DeoR family transcriptional regulator; Transcriptional repressor for the agaZVWA and agaSYBCDI operons; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa) |
| | ARD39023.1 | Molybdenum-dependent transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa) |
| | ARD39055.1 | LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa) |
| | ARD39066.1 | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa) |
