STRINGSTRING
ARD38302.1 ARD38302.1 rho rho ARD38767.1 ARD38767.1 ARD38729.1 ARD38729.1 ARD38728.1 ARD38728.1 ARD38403.1 ARD38403.1 rnb rnb B6E78_00455 B6E78_00455 rnr rnr
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ARD38302.1Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (419 aa)
ARD38767.1Cold shock domain protein CspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)
ARD38729.1Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
ARD38728.1Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
ARD38403.1Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
rnbExoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. (647 aa)
B6E78_00455Serine acetyltransferase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
rnrRibonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. Belongs to the RNR ribonuclease family. RNase R subfamily. (816 aa)
Your Current Organism:
Edwardsiella ictaluri
NCBI taxonomy Id: 67780
Other names: ATCC 33202, CCUG 18764, CIP 81.96, DSM 13697, E. ictaluri, JCM 16934, NCTC 12122, SECFDL GA 77-52
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