(29 nodes) Binding-protein-dependent transport system inner membrane component network (Edwardsiella ictaluri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARD40924.1	Phosphate ABC transporter permease subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (318 aa)
	oppB	Oligopeptide transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	ARD38266.1	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	ARD38290.1	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	ARD38323.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	ARD38324.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	ARD38367.1	Spermidine/putrescine ABC transporter permease PotC; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	ARD38368.1	Spermidine/putrescine ABC transporter permease PotB; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	B6E78_02225	Peptide ABC transporter ATP-binding protein; Involved in resistance to antimibial peptides; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	ARD38378.1	Antimicrobial peptide ABC transporter permease SapB; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	ARD38529.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	ARD38787.1	Arginine transporter permease subunit ArtQ; With ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	artM	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	ARD38836.1	Glutamine ABC transporter permease GlnP; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	modB	Molybdate ABC transporter permease; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (230 aa)
	ARD39087.1	Amino acid ABC transporter permease; With GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	ARD39088.1	Amino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	ARD40897.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	ARD39479.1	Sulfonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)
	ARD39686.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	ARD39688.1	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	ARD39735.1	Dipeptide ABC transporter permease DppC; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	ARD39736.1	Dipeptide ABC transporter permease DppB; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	ARD39855.1	Phosphate ABC transporter, permease protein PstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	malG	Maltose transporter permease; With MalKFE is involved in the transport of maltose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	ARD40033.1	Maltose ABC transporter permease MalF; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
	ARD40316.1	DL-methionine transporter permease subunit; Part of the MetNIQ methionine uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	thiP	Thiamine/thiamine pyrophosphate ABC transporter permease ThiP; Permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
	ARD40589.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)

Your Current Organism:

Edwardsiella ictaluri

NCBI taxonomy Id: 67780
Other names: ATCC 33202, CCUG 18764, CIP 81.96, DSM 13697, E. ictaluri, JCM 16934, NCTC 12122, SECFDL GA 77-52

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARD38266.1	ARD38324.1	B6E78_01535	B6E78_01890	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
ARD38266.1	ARD38378.1	B6E78_01535	B6E78_02230	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
ARD38266.1	ARD39736.1	B6E78_01535	B6E78_10395	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter permease DppB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
ARD38266.1	oppB	B6E78_01535	B6E78_01530	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARD38290.1	ARD38836.1	B6E78_01670	B6E78_05020	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine ABC transporter permease GlnP; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
ARD38290.1	ARD39087.1	B6E78_01670	B6E78_06560	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
ARD38290.1	ARD39088.1	B6E78_01670	B6E78_06565	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
ARD38290.1	ARD39686.1	B6E78_01670	B6E78_10085	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
ARD38290.1	ARD39688.1	B6E78_01670	B6E78_10095	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
ARD38290.1	artM	B6E78_01670	B6E78_04725	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
ARD38323.1	ARD38324.1	B6E78_01885	B6E78_01890	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ARD38323.1	ARD38378.1	B6E78_01885	B6E78_02230	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
ARD38323.1	ARD39736.1	B6E78_01885	B6E78_10395	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter permease DppB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
ARD38323.1	oppB	B6E78_01885	B6E78_01530	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
ARD38324.1	ARD38266.1	B6E78_01890	B6E78_01535	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
ARD38324.1	ARD38323.1	B6E78_01890	B6E78_01885	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ARD38324.1	ARD39735.1	B6E78_01890	B6E78_10390	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter permease DppC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
ARD38324.1	B6E78_02225	B6E78_01890	B6E78_02225	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Involved in resistance to antimibial peptides; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
ARD38367.1	ARD38368.1	B6E78_02170	B6E78_02175	Spermidine/putrescine ABC transporter permease PotC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter permease PotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARD38368.1	ARD38367.1	B6E78_02175	B6E78_02170	Spermidine/putrescine ABC transporter permease PotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter permease PotC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999