(21 nodes) Mce/MlaD, and Permease MlaE network (Rhodococcus sp. WMMA185)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOW93160.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	AOW94888.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
	AOW94889.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	AOW93161.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	AOW93162.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	AOW93163.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	AOW93164.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
	AOW94890.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AOW93165.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	AOW93166.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AOW94891.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	AOW95022.1	H domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	AOW93464.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	AOW93465.1	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	AOW93466.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	AOW93467.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	AOW95023.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
	AOW95024.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AOW93468.1	Mce family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AOW93469.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AOW93470.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)

Your Current Organism:

Rhodococcus sp. WMMA185

NCBI taxonomy Id: 679318
Other names: R. sp. WMMA185

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOW93160.1	AOW93161.1	BFN03_12245	BFN03_12260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AOW93160.1	AOW93162.1	BFN03_12245	BFN03_12265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AOW93160.1	AOW93163.1	BFN03_12245	BFN03_12270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AOW93160.1	AOW93164.1	BFN03_12245	BFN03_12275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
AOW93160.1	AOW93165.1	BFN03_12245	BFN03_12285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
AOW93160.1	AOW93166.1	BFN03_12245	BFN03_12290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
AOW93160.1	AOW94888.1	BFN03_12245	BFN03_12250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AOW93160.1	AOW94889.1	BFN03_12245	BFN03_12255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
AOW93160.1	AOW94890.1	BFN03_12245	BFN03_12280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AOW93160.1	AOW94891.1	BFN03_12245	BFN03_12295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
AOW93160.1	AOW95023.1	BFN03_12245	BFN03_14620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AOW93161.1	AOW93160.1	BFN03_12260	BFN03_12245	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AOW93161.1	AOW93162.1	BFN03_12260	BFN03_12265	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AOW93161.1	AOW93163.1	BFN03_12260	BFN03_12270	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AOW93161.1	AOW93164.1	BFN03_12260	BFN03_12275	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AOW93161.1	AOW93165.1	BFN03_12260	BFN03_12285	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AOW93161.1	AOW93166.1	BFN03_12260	BFN03_12290	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AOW93161.1	AOW93464.1	BFN03_12260	BFN03_14600	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AOW93161.1	AOW93465.1	BFN03_12260	BFN03_14605	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
AOW93161.1	AOW93467.1	BFN03_12260	BFN03_14615	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638