(85 nodes) Mixed, incl. Nitrogen compound transport, and ABC transporter-like, ATP-binding domain network (Rhodococcus sp. WMMA185)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOW94294.1	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	AOW91998.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	AOW91999.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	AOW92005.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	BFN03_03170	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	AOW92034.1	Anibiotic ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa)
	AOW92071.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AOW94369.1	Antibiotic transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	AOW92072.1	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AOW92360.1	Sodium:alanine symporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
	AOW92437.1	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	AOW94518.1	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AOW92438.1	Glutamate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (277 aa)
	AOW92439.1	Glutamate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AOW92440.1	Glutamate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (278 aa)
	AOW92477.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AOW92478.1	Caunorubicin/doxorubicin resistance ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AOW92636.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (187 aa)
	AOW92637.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (212 aa)
	AOW92638.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	AOW92639.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	AOW92640.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	AOW92641.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (258 aa)
	AOW92642.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (285 aa)
	AOW94675.1	SNF family Na(+)-dependent transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (492 aa)
	AOW94676.1	SNF family Na(+)-dependent transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)
	AOW92773.1	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AOW94679.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	AOW94680.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (306 aa)
	AOW93128.1	L-cystine-binding protein TcyA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (269 aa)
	AOW94874.1	L-cystine-binding protein TcyA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (272 aa)
	AOW94875.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	glnQ	Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AOW93178.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AOW93179.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AOW93250.1	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AOW93290.1	NTP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AOW94949.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AOW94950.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	AOW93356.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	AOW93436.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AOW93437.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	BFN03_14415	Transcriptional regulator; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AOW95015.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	AOW93439.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AOW93440.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AOW93494.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	AOW93495.1	Transport ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AOW95035.1	TIGR00341 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AOW93498.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
	AOW93505.1	Bleomycin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	AOW95040.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AOW95039.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	AOW93506.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	AOW93507.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	AOW93508.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	AOW95041.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	AOW93563.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AOW93564.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AOW93566.1	Sodium:alanine symporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	AOW93637.1	Ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AOW93638.1	Ectoine/hydroxyectoine ABC transporter permease subunit EhuD; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	AOW95097.1	Ectoine/hydroxyectoine ABC transporter permease subunit EhuC; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	AOW95098.1	Ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AOW95105.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (578 aa)
	AOW93649.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AOW93650.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AOW93651.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (538 aa)
	BFN03_16520	SAM-dependent methyltransferase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
	AOW93711.1	Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (82 aa)
	AOW93823.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
	AOW93933.1	Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (514 aa)
	AOW95240.1	Lactate utilization protein C; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	AOW93999.1	(4Fe-4S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)
	AOW94000.1	Fe-S oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AOW94001.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	AOW94002.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
	AOW94003.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	AOW94004.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (604 aa)
	AOW94070.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	AOW95258.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AOW94071.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
	AOW94148.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	AOW94149.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AOW95277.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)

Your Current Organism:

Rhodococcus sp. WMMA185

NCBI taxonomy Id: 679318
Other names: R. sp. WMMA185

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOW91998.1	AOW91999.1	BFN03_02925	BFN03_02930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AOW91998.1	AOW92005.1	BFN03_02925	BFN03_02970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AOW91998.1	AOW93823.1	BFN03_02925	BFN03_17345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AOW91999.1	AOW91998.1	BFN03_02930	BFN03_02925	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AOW91999.1	AOW92005.1	BFN03_02930	BFN03_02970	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
AOW91999.1	AOW95040.1	BFN03_02930	BFN03_14895	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
AOW92005.1	AOW91998.1	BFN03_02970	BFN03_02925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AOW92005.1	AOW91999.1	BFN03_02970	BFN03_02930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
AOW92005.1	AOW93933.1	BFN03_02970	BFN03_18145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.428
AOW92034.1	AOW92640.1	BFN03_03175	BFN03_07895	Anibiotic ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
AOW92034.1	AOW93495.1	BFN03_03175	BFN03_14820	Anibiotic ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transport ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
AOW92034.1	AOW94070.1	BFN03_03175	BFN03_19115	Anibiotic ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AOW92034.1	AOW95258.1	BFN03_03175	BFN03_19120	Anibiotic ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
AOW92034.1	BFN03_03170	BFN03_03175	BFN03_03170	Anibiotic ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Incomplete; partial on complete genome; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AOW92071.1	AOW92072.1	BFN03_03420	BFN03_03430	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AOW92071.1	AOW92477.1	BFN03_03420	BFN03_06555	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
AOW92071.1	AOW92478.1	BFN03_03420	BFN03_06560	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Caunorubicin/doxorubicin resistance ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
AOW92071.1	AOW92640.1	BFN03_03420	BFN03_07895	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AOW92071.1	AOW93178.1	BFN03_03420	BFN03_12445	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AOW92071.1	AOW93179.1	BFN03_03420	BFN03_12450	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535