(12 nodes) Virulence factor Mce protein network (Rhodococcus sp. WMMA185)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOW93163.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	AOW93468.1	Mce family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AOW95024.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AOW95023.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
	AOW93467.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	AOW93466.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	AOW93465.1	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	AOW94890.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AOW93164.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
	AOW93162.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	AOW93161.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	AOW94889.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)

Your Current Organism:

Rhodococcus sp. WMMA185

NCBI taxonomy Id: 679318
Other names: R. sp. WMMA185

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOW93161.1	AOW93162.1	BFN03_12260	BFN03_12265	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AOW93161.1	AOW93163.1	BFN03_12260	BFN03_12270	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AOW93161.1	AOW93164.1	BFN03_12260	BFN03_12275	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AOW93161.1	AOW93465.1	BFN03_12260	BFN03_14605	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
AOW93161.1	AOW93467.1	BFN03_12260	BFN03_14615	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
AOW93161.1	AOW93468.1	BFN03_12260	BFN03_14630	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mce family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AOW93161.1	AOW94889.1	BFN03_12260	BFN03_12255	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AOW93161.1	AOW94890.1	BFN03_12260	BFN03_12280	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AOW93161.1	AOW95023.1	BFN03_12260	BFN03_14620	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AOW93161.1	AOW95024.1	BFN03_12260	BFN03_14625	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
AOW93162.1	AOW93161.1	BFN03_12265	BFN03_12260	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AOW93162.1	AOW93163.1	BFN03_12265	BFN03_12270	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AOW93162.1	AOW93164.1	BFN03_12265	BFN03_12275	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AOW93162.1	AOW93465.1	BFN03_12265	BFN03_14605	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Virulence factor Mce; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
AOW93162.1	AOW93466.1	BFN03_12265	BFN03_14610	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AOW93162.1	AOW93468.1	BFN03_12265	BFN03_14630	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mce family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
AOW93162.1	AOW94889.1	BFN03_12265	BFN03_12255	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AOW93162.1	AOW94890.1	BFN03_12265	BFN03_12280	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AOW93162.1	AOW95023.1	BFN03_12265	BFN03_14620	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
AOW93162.1	AOW95024.1	BFN03_12265	BFN03_14625	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487