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| | eif2g | Protein synthesis factor GTP-binding protein; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily. (411 aa) |
| | Mpet_0090 | Nucleotide binding protein, PINc; COGs: COG1412 Uncharacterized protein of PilT N-term./Vapc superfamily; KEGG: mem:Memar_2241 nucleotide binding protein, PINc; SPTR: Nucleotide binding protein, PINc; PFAM: Fcf1. (137 aa) |
| | rps24e | COGs: COG2004 Ribosomal protein S24E; InterPro IPR001976; KEGG: mem:Memar_2245 ribosomal protein S24e; PFAM: Ribosomal protein S24e; SPTR: SSU ribosomal protein S24E; PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (105 aa) |
| | rps27ae | COGs: COG1998 Ribosomal protein S27AE; InterPro IPR002906; KEGG: mem:Memar_2246 ribosomal protein S27a; PFAM: Ribosomal protein S27a; SPTR: SSU ribosomal protein S27AE; PFAM: Ribosomal protein S27a; Belongs to the eukaryotic ribosomal protein eS31 family. (51 aa) |
| | rpl40e | Ribosomal protein L40e; InterPro IPR001975; KEGG: apo:Arcpr_0963 ribosomal protein L40e; PFAM: Ribosomal protein L40e; SPTR: Ribosomal protein L40e; PFAM: Ribosomal L40e family; Belongs to the eukaryotic ribosomal protein eL40 family. (48 aa) |
| | ef1b | Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. (86 aa) |
| | Mpet_0166 | KEGG: mla:Mlab_0627 hypothetical protein; SPTR: Putative uncharacterized protein. (52 aa) |
| | Mpet_0207 | COGs: COG1439 nucleic acid-binding protein consists of a PIN domain and a Zn-ribbon module; InterPro IPR006596; KEGG: mhu:Mhun_0974 nucleic acid binding protein; SMART: Nucleotide binding protein PINc; SPTR: Nucleic acid-binding protein, containing PIN domain and zinc-ribbon module; PFAM: UPF0278 family. (153 aa) |
| | truB | Pseudouridylate synthase TruB domain protein; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. (305 aa) |
| | Mpet_0393 | Pre-mRNA processing ribonucleoprotein, binding domain protein; COGs: COG1498 Protein implicated in ribosomal biogenesis Nop56p homolog; InterPro IPR002687; KEGG: mem:Memar_0541 pre-mRNA processing ribonucleoprotein, binding region; PFAM: Pre-mRNA processing ribonucleoprotein, binding domain protein; SPTR: rRNA biogenesis protein Nop56/Nop58; PFAM: Putative snoRNA binding domain. (291 aa) |
| | flpA | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (200 aa) |
| | eif1a | Translation initiation factor eIF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (105 aa) |
| | Mpet_0567 | Heat shock protein DnaJ domain protein; COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623:IPR003095:IPR018253; KEGG: mga:MGA_1324d hypothetical protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: DnaJ-like molecular chaperone; PFAM: DnaJ domain. (183 aa) |
| | map | Methionine aminopeptidase, type II; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily. (292 aa) |
| | eif2b | Translation initiation factor aIF-2, beta subunit; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-beta/eIF-5 family. (205 aa) |
| | fusA | Translation elongation factor aEF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...] (731 aa) |
| | rps7 | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (209 aa) |
| | rps12 | Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (142 aa) |
| | prf1 | Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. (423 aa) |
| | tuf | Translation elongation factor EF-1, subunit alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily. (425 aa) |
| | rps10 | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | Mpet_0710 | GTP-binding protein HSR1-related protein; COGs: COG1084 GTPase; InterPro IPR006073:IPR002917; KEGG: mem:Memar_1923 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: Small GTP-binding protein; PFAM: Nucleolar GTP-binding protein 1 (NOG1); TIGRFAM: small GTP-binding protein domain. (320 aa) |
| | rps13 | Ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (148 aa) |
| | rps4 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (182 aa) |
| | rps11 | Ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (130 aa) |
| | rpoD | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family. (274 aa) |
| | rpl18e | COGs: COG1727 Ribosomal protein L18E; InterPro IPR000039:IPR001196; KEGG: mem:Memar_1804 50S ribosomal protein L18e; PFAM: ribosomal protein L15; SPTR: Ribosomal protein L18; PFAM: Ribosomal protein L18e/L15; Belongs to the eukaryotic ribosomal protein eL18 family. (120 aa) |
| | rpl13 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (140 aa) |
| | rps9 | COGs: COG0103 Ribosomal protein S9; InterPro IPR020574:IPR000754:IPR019958; KEGG: mla:Mlab_1241 30S ribosomal protein S9P; PFAM: ribosomal protein S9; SPTR: 30S ribosomal protein S9P; TIGRFAM: ribosomal protein S9P; PFAM: Ribosomal protein S9/S16; TIGRFAM: archaeal ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (133 aa) |
| | rps2 | COGs: COG0052 Ribosomal protein S2; InterPro IPR018130:IPR001865:IPR005707; KEGG: mem:Memar_1810 30S ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2P; TIGRFAM: ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein Sa(cytosolic)/S2(archaeal); Belongs to the universal ribosomal protein uS2 family. (203 aa) |
| | Mpet_0868 | Hypothetical protein; InterPro IPR001976; KEGG: mma:MM_0599 30S ribosomal protein S24e; SPTR: 30S ribosomal protein S24e; PFAM: Ribosomal protein S24e. (85 aa) |
| | rpl15e | COGs: COG1632 Ribosomal protein L15E; InterPro IPR000439; KEGG: mem:Memar_1681 50S ribosomal protein L15e; PFAM: Ribosomal protein L15e; SPTR: 50S ribosomal protein L15e; PFAM: Ribosomal L15; Belongs to the eukaryotic ribosomal protein eL15 family. (211 aa) |
| | Mpet_0959 | Ribosome maturation protein SBDS; COGs: COG1500 exosome subunit; InterPro IPR002140:IPR019783:IPR018978; KEGG: mbn:Mboo_1821 putative RNA-associated protein; PFAM: Ribosome maturation protein SBDS-like; SPTR: Shwachman-Bodian-Diamond syndrome protein; PFAM: Shwachman-Bodian-Diamond syndrome (SBDS) protein; SBDS protein C-terminal domain; TIGRFAM: conserved hypothetical protein TIGR00291. (233 aa) |
| | rpl37ae | Ribosomal protein L37a; Binds to the 23S rRNA. (96 aa) |
| | Mpet_0962 | KEGG: mem:Memar_1674 hypothetical protein; SPTR: Putative uncharacterized protein. (133 aa) |
| | Mpet_0983 | NMD3 family protein; COGs: COG1499 NMD protein affecting ribosome stability and mRNA decay; InterPro IPR007064; KEGG: mla:Mlab_0924 hypothetical protein; PFAM: NMD3 family protein; SPTR: NMD3; PFAM: NMD3 family. (347 aa) |
| | eif5a | Translation initiation factor eIF-5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. (126 aa) |
| | rlmE | Ribosomal RNA methyltransferase RrmJ/FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. (199 aa) |
| | rps17e | COGs: COG1383 Ribosomal protein S17E; InterPro IPR001210; KEGG: mpl:Mpal_0477 30S ribosomal protein S17e; PFAM: Ribosomal protein S17e; SPTR: 30S ribosomal protein S17e; PFAM: Ribosomal S17; Belongs to the eukaryotic ribosomal protein eS17 family. (63 aa) |
| | Mpet_1497 | Ribonuclease III; COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR000999:IPR001412; KEGG: mhu:Mhun_1116 ribonuclease III; PFAM: ribonuclease III; SMART: ribonuclease III; SPTR: Ribonuclease III; PFAM: RNase3 domain. (173 aa) |
| | nusA | NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family. (156 aa) |
| | Mpet_1733 | COGs: COG1911 Ribosomal protein L30E; InterPro IPR004038; KEGG: mhu:Mhun_0054 ribosomal protein L7Ae/L30e/S12e/Gadd45; PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; SPTR: 50S ribosomal protein L30e; PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family. (95 aa) |
| | nop10 | RNA-binding protein Nop10p; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. (51 aa) |
| | Mpet_1771 | COGs: COG1093 Translation initiation factor 2 alpha subunit (eIF-2alpha); InterPro IPR003029:IPR011488; KEGG: mpl:Mpal_0957 translation initiation factor 2, alpha subunit; PFAM: translation initiation factor 2, alpha subunit; RNA binding S1 domain protein; SPTR: Translation initiation factor 2, alpha subunit; PFAM: Eukaryotic translation initiation factor 2 alpha subunit; S1 RNA binding domain. (262 aa) |
| | rps27e | COGs: COG2051 Ribosomal protein S27E; InterPro IPR000592; KEGG: mpl:Mpal_0956 ribosomal protein S27E; PFAM: Ribosomal protein S27E; SPTR: 30S ribosomal protein S27e; PFAM: Ribosomal protein S27. (62 aa) |
| | rpl44e | Ribosomal protein L44E; Binds to the 23S rRNA. (92 aa) |
| | proS | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). (477 aa) |
| | Mpet_1822 | COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR017228:IPR001950:IPR005872; KEGG: mla:Mlab_0321 translation initiation factor SUI1; PFAM: translation initiation factor SUI1; SPTR: Protein translation factor SUI1 homolog; TIGRFAM: translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, putative, prokaryotic; Belongs to the SUI1 family. (101 aa) |
| | rps19e | Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (149 aa) |
| | rpl31e | COGs: COG2097 Ribosomal protein L31E; InterPro IPR000054; KEGG: mem:Memar_1969 50S ribosomal protein L31e; PFAM: Ribosomal protein L31e; SPTR: 50S ribosomal protein L31e; PFAM: Ribosomal protein L31e; Belongs to the ribosomal protein L31e family. (87 aa) |
| | eif6 | Translation initiation factor eIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (218 aa) |
| | rpl18a | Ribosomal LX protein; InterPro IPR002768; KEGG: mem:Memar_1967 ribosomal LX protein; PFAM: Ribosomal LX protein; SPTR: LSU ribosomal protein LX; PFAM: Ribosomal L18ae/LX protein domain. (63 aa) |
| | ftsY | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). (361 aa) |
| | srp54 | GTP-binding signal recognition particle SRP54 G- domain protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (441 aa) |
| | rpl21e | COGs: COG2139 Ribosomal protein L21E; InterPro IPR001147:IPR018259; KEGG: mbn:Mboo_1874 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; SPTR: 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa) |
| | rps15 | COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR012606:IPR000589; KEGG: mhu:Mhun_2511 30S ribosomal protein S15P; PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; SPTR: 30S ribosomal protein S15P/S13e; PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15. (152 aa) |
| | rps3ae | COGs: COG1890 Ribosomal protein S3AE; InterPro IPR001593; KEGG: mem:Memar_0427 30S ribosomal protein S3Ae; PFAM: ribosomal protein S3Ae; SPTR: 30S ribosomal protein S3Ae; PFAM: Ribosomal S3Ae family; Belongs to the eukaryotic ribosomal protein eS1 family. (201 aa) |
| | Mpet_2071 | ABC transporter related protein; COGs: COG1245 ATPase RNase L inhibitor (RLI) homolog; InterProIPR003593:IPR013283:IPR007209:IPR001450:IPR 003439:IPR017900:IPR017871:IPR017896; KEGG: mbn:Mboo_1332 putative ATPase RIL; PFAM: ABC transporter related; metal-binding domain in RNase L inhibitor, RLI; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter; Possible metal-binding domain in RNase L inhibitor, RLI; 4Fe-4S binding domain. (591 aa) |
| | Mpet_2087 | Transcriptional regulator, XRE family; COGs: COG1813 transcription factor homolog of eukaryotic MBF1; InterPro IPR004451:IPR001387; KEGG: mbn:Mboo_1462 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Helix-turn-helix domain protein; manually curated; PFAM: Helix-turn-helix; TIGRFAM: conserved hypothetical protein TIGR00270. (169 aa) |
| | rpl7ae | Ribosomal protein L7Ae/L30e/S12e/Gadd45; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (122 aa) |
| | rps28e | COGs: COG2053 Ribosomal protein S28E/S33; InterPro IPR000289; KEGG: mbn:Mboo_0689 30S ribosomal protein S28e; PFAM: Ribosomal protein S28e; SPTR: Ribosomal protein S28e; PFAM: Ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. (68 aa) |
| | rpl24e | Ribosomal protein L24E; Binds to the 23S rRNA. (63 aa) |
| | ndk | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. (149 aa) |
| | rpl12 | Ribosomal protein 60S; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (103 aa) |
| | rpl10 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (282 aa) |
| | rpl1 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (214 aa) |
| | rpl11 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (157 aa) |
| | spt5 | NusG antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (158 aa) |
| | infB | Translation initiation factor aIF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. (604 aa) |
| | rps6e | COGs: COG2125 Ribosomal protein S6E (S10); InterPro IPR001377; KEGG: mem:Memar_0462 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; SPTR: 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (135 aa) |
| | rps8e | COGs: COG2007 Ribosomal protein S8E; InterPro IPR001047; KEGG: mpl:Mpal_0336 ribosomal protein S8e; PFAM: Ribosomal protein S8E; SPTR: 30S ribosomal protein S8e; TIGRFAM: ribosomal protein S8e; PFAM: Ribosomal protein S8e; TIGRFAM: ribosomal protein S8.e. (125 aa) |
| | srp19 | Ribonucleoprotein complex SRP, Srp19 component; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP. (104 aa) |
| | Mpet_2177 | KEGG: mpl:Mpal_0332 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Gar1/Naf1 RNA binding region. (77 aa) |
| | rpl3 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (337 aa) |
| | rpl4 | 50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (248 aa) |
| | rpl23 | Ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (82 aa) |
| | rpl2 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (237 aa) |
| | rps19p | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (137 aa) |
| | rpl22 | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (155 aa) |
| | rps3 | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (241 aa) |
| | rpl29 | Ribosomal protein L29; InterPro IPR001854; KEGG: mla:Mlab_0088 50S ribosomal protein L29P; PFAM: ribosomal protein L29; SPTR: LSU ribosomal protein L29P; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (68 aa) |
| | rps17 | Ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (108 aa) |
| | rpl14 | 50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa) |
| | rpl24 | Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. (121 aa) |
| | rps4e | COGs: COG1471 Ribosomal protein S4E; InterProIPR013845:IPR013843:IPR005824:IPR002942:IPR 000876; KEGG: mbn:Mboo_0544 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; KOW domain protein; SPTR: Ribosomal protein S4E, central; PFAM: Ribosomal family S4e; RS4NT (NUC023) domain; Belongs to the eukaryotic ribosomal protein eS4 family. (242 aa) |
| | rpl5 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (165 aa) |
| | rps14 | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles. (58 aa) |
| | rps8 | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa) |
| | rpl6 | Ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (174 aa) |
| | Mpet_2205 | COGs: COG1717 Ribosomal protein L32E; InterPro IPR018263:IPR001515; KEGG: mhu:Mhun_2236 50S ribosomal protein L32e; PFAM: Ribosomal protein L32e; SPTR: LSU ribosomal protein L32E; PFAM: Ribosomal protein L32. (177 aa) |
| | rpl19e | Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (150 aa) |
| | rpl18 | Ribosomal protein L18P/L5E; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (175 aa) |
| | rps5 | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (205 aa) |
| | rpl30 | COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR018038:IPR000517:IPR005997; KEGG: mem:Memar_0585 50S ribosomal protein L30P; PFAM: ribosomal protein L30; SPTR: 50S ribosomal protein L30P; TIGRFAM: ribosomal protein L30P; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal. (153 aa) |
| | rpl15 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (141 aa) |
| | rpl10e | COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR018255:IPR016180:IPR001197; KEGG: mpl:Mpal_1074 ribosomal protein L10.e; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L10e; TIGRFAM: ribosomal protein L10.e; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L10.e; Belongs to the universal ribosomal protein uL16 family. (172 aa) |
| | Mpet_2591 | COGs: COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain; InterPro IPR015285:IPR018934:IPR000687; KEGG: mem:Memar_0482 protein of unknown function RIO1; PFAM: RIO-like kinase; RIO2 kinase, winged helix domain protein; PRIAM: Non-specific serine/threonine protein kinase; SMART: protein of unknown function RIO1; SPTR: Serine/threonine protein kinase; PFAM: RIO1 family; Rio2, N-terminal. (286 aa) |
| | rpl37e | Ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (60 aa) |
| | Mpet_2809 | COGs: COG1718 Serine/threonine protein kinase involved in cell cycle control; InterPro IPR000719:IPR000687:IPR018935:IPR018934; KEGG: mem:Memar_2499 protein of unknown function RIO1; PFAM: RIO-like kinase; PRIAM: Non-specific serine/threonine protein kinase; SMART: protein of unknown function RIO1; SPTR: Putative uncharacterized protein; PFAM: RIO1 family. (265 aa) |
| | Mpet_2822 | KH domain protein; COGs: COG1094 RNA-binding protein (contains KH domains); InterPro IPR004088:IPR004087:IPR019964:IPR018111; KEGG: mem:Memar_2500 putative RNA-processing protein; PFAM: K Homology, type 1, subgroup; SMART: KH domain protein; SPTR: KH, type 1, domain protein; TIGRFAM: KH domain protein; PFAM: KH domain; TIGRFAM: arCOG04150 universal archaeal KH domain protein. (180 aa) |
