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rps24e rps24e rps27ae rps27ae rpl40e rpl40e rps7 rps7 rps12 rps12 rps10 rps10 rps13 rps13 rps4 rps4 rps11 rps11 rpl18e rpl18e rpl13 rpl13 rps9 rps9 rps2 rps2 Mpet_0868 Mpet_0868 rpl15e rpl15e rpl37ae rpl37ae rps17e rps17e Mpet_1733 Mpet_1733 rps27e rps27e rpl44e rpl44e rps19e rps19e rpl39e rpl39e rpl31e rpl31e rpl18a rpl18a rpl21e rpl21e rps15 rps15 rps3ae rps3ae rpl7ae rpl7ae rps28e rps28e rpl24e rpl24e rpl12 rpl12 rpl10 rpl10 rpl1 rpl1 rpl11 rpl11 rps6e rps6e rps8e rps8e rpl3 rpl3 rpl4 rpl4 rpl23 rpl23 rpl2 rpl2 rps19p rps19p rpl22 rpl22 rps3 rps3 rpl29 rpl29 rps17 rps17 rpl14 rpl14 rpl24 rpl24 rps4e rps4e rpl5 rpl5 rps14 rps14 rps8 rps8 rpl6 rpl6 Mpet_2205 Mpet_2205 rpl19e rpl19e rpl18 rpl18 rps5 rps5 rpl30 rpl30 rpl15 rpl15 rpl10e rpl10e rpl37e rpl37e
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps24eCOGs: COG2004 Ribosomal protein S24E; InterPro IPR001976; KEGG: mem:Memar_2245 ribosomal protein S24e; PFAM: Ribosomal protein S24e; SPTR: SSU ribosomal protein S24E; PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (105 aa)
rps27aeCOGs: COG1998 Ribosomal protein S27AE; InterPro IPR002906; KEGG: mem:Memar_2246 ribosomal protein S27a; PFAM: Ribosomal protein S27a; SPTR: SSU ribosomal protein S27AE; PFAM: Ribosomal protein S27a; Belongs to the eukaryotic ribosomal protein eS31 family. (51 aa)
rpl40eRibosomal protein L40e; InterPro IPR001975; KEGG: apo:Arcpr_0963 ribosomal protein L40e; PFAM: Ribosomal protein L40e; SPTR: Ribosomal protein L40e; PFAM: Ribosomal L40e family; Belongs to the eukaryotic ribosomal protein eL40 family. (48 aa)
rps7Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (209 aa)
rps12Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (142 aa)
rps10Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
rps13Ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (148 aa)
rps4Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (182 aa)
rps11Ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (130 aa)
rpl18eCOGs: COG1727 Ribosomal protein L18E; InterPro IPR000039:IPR001196; KEGG: mem:Memar_1804 50S ribosomal protein L18e; PFAM: ribosomal protein L15; SPTR: Ribosomal protein L18; PFAM: Ribosomal protein L18e/L15; Belongs to the eukaryotic ribosomal protein eL18 family. (120 aa)
rpl13Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (140 aa)
rps9COGs: COG0103 Ribosomal protein S9; InterPro IPR020574:IPR000754:IPR019958; KEGG: mla:Mlab_1241 30S ribosomal protein S9P; PFAM: ribosomal protein S9; SPTR: 30S ribosomal protein S9P; TIGRFAM: ribosomal protein S9P; PFAM: Ribosomal protein S9/S16; TIGRFAM: archaeal ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (133 aa)
rps2COGs: COG0052 Ribosomal protein S2; InterPro IPR018130:IPR001865:IPR005707; KEGG: mem:Memar_1810 30S ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2P; TIGRFAM: ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein Sa(cytosolic)/S2(archaeal); Belongs to the universal ribosomal protein uS2 family. (203 aa)
Mpet_0868Hypothetical protein; InterPro IPR001976; KEGG: mma:MM_0599 30S ribosomal protein S24e; SPTR: 30S ribosomal protein S24e; PFAM: Ribosomal protein S24e. (85 aa)
rpl15eCOGs: COG1632 Ribosomal protein L15E; InterPro IPR000439; KEGG: mem:Memar_1681 50S ribosomal protein L15e; PFAM: Ribosomal protein L15e; SPTR: 50S ribosomal protein L15e; PFAM: Ribosomal L15; Belongs to the eukaryotic ribosomal protein eL15 family. (211 aa)
rpl37aeRibosomal protein L37a; Binds to the 23S rRNA. (96 aa)
rps17eCOGs: COG1383 Ribosomal protein S17E; InterPro IPR001210; KEGG: mpl:Mpal_0477 30S ribosomal protein S17e; PFAM: Ribosomal protein S17e; SPTR: 30S ribosomal protein S17e; PFAM: Ribosomal S17; Belongs to the eukaryotic ribosomal protein eS17 family. (63 aa)
Mpet_1733COGs: COG1911 Ribosomal protein L30E; InterPro IPR004038; KEGG: mhu:Mhun_0054 ribosomal protein L7Ae/L30e/S12e/Gadd45; PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; SPTR: 50S ribosomal protein L30e; PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family. (95 aa)
rps27eCOGs: COG2051 Ribosomal protein S27E; InterPro IPR000592; KEGG: mpl:Mpal_0956 ribosomal protein S27E; PFAM: Ribosomal protein S27E; SPTR: 30S ribosomal protein S27e; PFAM: Ribosomal protein S27. (62 aa)
rpl44eRibosomal protein L44E; Binds to the 23S rRNA. (92 aa)
rps19eRibosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (149 aa)
rpl39eRibosomal protein L39e; InterPro IPR000077:IPR020083; KEGG: mla:Mlab_1480 50S ribosomal protein L39E; PFAM: Ribosomal protein L39e; SPTR: 50S ribosomal protein L39e; PFAM: Ribosomal L39 protein; Belongs to the eukaryotic ribosomal protein eL39 family. (50 aa)
rpl31eCOGs: COG2097 Ribosomal protein L31E; InterPro IPR000054; KEGG: mem:Memar_1969 50S ribosomal protein L31e; PFAM: Ribosomal protein L31e; SPTR: 50S ribosomal protein L31e; PFAM: Ribosomal protein L31e; Belongs to the ribosomal protein L31e family. (87 aa)
rpl18aRibosomal LX protein; InterPro IPR002768; KEGG: mem:Memar_1967 ribosomal LX protein; PFAM: Ribosomal LX protein; SPTR: LSU ribosomal protein LX; PFAM: Ribosomal L18ae/LX protein domain. (63 aa)
rpl21eCOGs: COG2139 Ribosomal protein L21E; InterPro IPR001147:IPR018259; KEGG: mbn:Mboo_1874 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; SPTR: 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa)
rps15COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR012606:IPR000589; KEGG: mhu:Mhun_2511 30S ribosomal protein S15P; PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; SPTR: 30S ribosomal protein S15P/S13e; PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15. (152 aa)
rps3aeCOGs: COG1890 Ribosomal protein S3AE; InterPro IPR001593; KEGG: mem:Memar_0427 30S ribosomal protein S3Ae; PFAM: ribosomal protein S3Ae; SPTR: 30S ribosomal protein S3Ae; PFAM: Ribosomal S3Ae family; Belongs to the eukaryotic ribosomal protein eS1 family. (201 aa)
rpl7aeRibosomal protein L7Ae/L30e/S12e/Gadd45; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (122 aa)
rps28eCOGs: COG2053 Ribosomal protein S28E/S33; InterPro IPR000289; KEGG: mbn:Mboo_0689 30S ribosomal protein S28e; PFAM: Ribosomal protein S28e; SPTR: Ribosomal protein S28e; PFAM: Ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. (68 aa)
rpl24eRibosomal protein L24E; Binds to the 23S rRNA. (63 aa)
rpl12Ribosomal protein 60S; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (103 aa)
rpl10Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (282 aa)
rpl1Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (214 aa)
rpl11Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (157 aa)
rps6eCOGs: COG2125 Ribosomal protein S6E (S10); InterPro IPR001377; KEGG: mem:Memar_0462 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; SPTR: 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (135 aa)
rps8eCOGs: COG2007 Ribosomal protein S8E; InterPro IPR001047; KEGG: mpl:Mpal_0336 ribosomal protein S8e; PFAM: Ribosomal protein S8E; SPTR: 30S ribosomal protein S8e; TIGRFAM: ribosomal protein S8e; PFAM: Ribosomal protein S8e; TIGRFAM: ribosomal protein S8.e. (125 aa)
rpl3Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (337 aa)
rpl450S ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (248 aa)
rpl23Ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (82 aa)
rpl2Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (237 aa)
rps19pRibosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (137 aa)
rpl22Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (155 aa)
rps3Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (241 aa)
rpl29Ribosomal protein L29; InterPro IPR001854; KEGG: mla:Mlab_0088 50S ribosomal protein L29P; PFAM: ribosomal protein L29; SPTR: LSU ribosomal protein L29P; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (68 aa)
rps17Ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (108 aa)
rpl1450S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa)
rpl24Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. (121 aa)
rps4eCOGs: COG1471 Ribosomal protein S4E; InterProIPR013845:IPR013843:IPR005824:IPR002942:IPR 000876; KEGG: mbn:Mboo_0544 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; KOW domain protein; SPTR: Ribosomal protein S4E, central; PFAM: Ribosomal family S4e; RS4NT (NUC023) domain; Belongs to the eukaryotic ribosomal protein eS4 family. (242 aa)
rpl5Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (165 aa)
rps14Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles. (58 aa)
rps8Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rpl6Ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (174 aa)
Mpet_2205COGs: COG1717 Ribosomal protein L32E; InterPro IPR018263:IPR001515; KEGG: mhu:Mhun_2236 50S ribosomal protein L32e; PFAM: Ribosomal protein L32e; SPTR: LSU ribosomal protein L32E; PFAM: Ribosomal protein L32. (177 aa)
rpl19eRibosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (150 aa)
rpl18Ribosomal protein L18P/L5E; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (175 aa)
rps5Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (205 aa)
rpl30COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR018038:IPR000517:IPR005997; KEGG: mem:Memar_0585 50S ribosomal protein L30P; PFAM: ribosomal protein L30; SPTR: 50S ribosomal protein L30P; TIGRFAM: ribosomal protein L30P; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal. (153 aa)
rpl15Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (141 aa)
rpl10eCOGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR018255:IPR016180:IPR001197; KEGG: mpl:Mpal_1074 ribosomal protein L10.e; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L10e; TIGRFAM: ribosomal protein L10.e; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L10.e; Belongs to the universal ribosomal protein uL16 family. (172 aa)
rpl37eRibosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (60 aa)
Your Current Organism:
Methanolacinia petrolearia
NCBI taxonomy Id: 679926
Other names: M. petrolearia DSM 11571, Methanolacinia petrolearia DSM 11571, Methanoplanus petrolearius DSM 11571, Methanoplanus petrolearius SEBR 4847
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