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| | Alfi_0006 | Peroxiredoxin; PFAM: AhpC/TSA family. (153 aa) |
| | Alfi_0011 | HIT family hydrolase, diadenosine tetraphosphate hydrolase; PFAM: HIT domain. (128 aa) |
| | Alfi_0030 | Acetyltransferase, N-acetylglutamate synthase; PFAM: Acetyltransferase (GNAT) family. (149 aa) |
| | Alfi_0052 | N-acetyl-beta-hexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain; PA14 domain. (751 aa) |
| | Alfi_0053 | Arylsulfatase A family protein; PFAM: Sulfatase. (524 aa) |
| | Alfi_0077 | N-acetyl-beta-hexosaminidase; PFAM: PA14 domain; Glycosyl hydrolase family 20, catalytic domain. (748 aa) |
| | Alfi_0084 | acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (264 aa) |
| | Alfi_0089 | PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain. (439 aa) |
| | rpmI | PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (64 aa) |
| | rplT | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (114 aa) |
| | Alfi_0104 | Putative Zn-dependent hydrolase of beta-lactamase fold protein. (240 aa) |
| | Alfi_0109 | ATP-dependent DNA helicase, RecQ family; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family. (658 aa) |
| | Alfi_0113 | Hypothetical protein. (285 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (400 aa) |
| | Alfi_0125 | PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family. (491 aa) |
| | Alfi_0145 | PFAM: Deoxynucleoside kinase. (204 aa) |
| | rplU | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | Alfi_0167 | ATP-dependent DNA helicase RecQ; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family. (730 aa) |
| | rpsP | PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (184 aa) |
| | Alfi_0249 | RNAse H-fold protein YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (137 aa) |
| | Alfi_0252 | DNA repair protein radc; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; Belongs to the UPF0758 family. (204 aa) |
| | cutC | Uncharacterized protein involved in copper resistance; Participates in the control of copper homeostasis. Belongs to the CutC family. (244 aa) |
| | Alfi_0279 | Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase. (238 aa) |
| | Alfi_0286 | Hypothetical protein. (199 aa) |
| | Alfi_0295 | Hypothetical protein. (242 aa) |
| | Alfi_0296 | Hypothetical protein. (796 aa) |
| | dnaJ | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (388 aa) |
| | Alfi_0332 | Putative acyltransferase; PFAM: Acetyltransferase (GNAT) family. (147 aa) |
| | Alfi_0364 | alpha-L-fucosidase; PFAM: F5/8 type C domain; Alpha-L-fucosidase. (680 aa) |
| | Alfi_0371 | AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-binding enzyme. (558 aa) |
| | Alfi_0373 | Hypothetical protein. (319 aa) |
| | tadA | Cytosine/adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (149 aa) |
| | Alfi_0377 | PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA). (424 aa) |
| | Alfi_0413 | PFAM: Glutamine cyclotransferase. (263 aa) |
| | Alfi_0416 | Amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase. (370 aa) |
| | Alfi_0420 | PFAM: Protein of unknown function (DUF1237). (518 aa) |
| | Alfi_0429 | Alpha-mannosidase; PFAM: Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases family 38 N-terminal domain; Alpha mannosidase, middle domain. (1068 aa) |
| | Alfi_0433 | Archaeal/vacuolar-type H+-ATPase subunit B; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain. (440 aa) |
| | Alfi_0435 | PFAM: Protein of unknown function (DUF2764). (277 aa) |
| | Alfi_0469 | PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase. (470 aa) |
| | Alfi_0489 | PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain. (430 aa) |
| | Alfi_0512 | ParB-like partition protein; PFAM: Helix-turn-helix; ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family. (291 aa) |
| | Alfi_0527 | Putative hydrolase of the metallo-beta-lactamase superfamily; PFAM: Metallo-beta-lactamase superfamily. (245 aa) |
| | Alfi_0531 | Hypothetical protein. (115 aa) |
| | Alfi_0532 | PFAM: Reverse transcriptase (RNA-dependent DNA polymerase). (345 aa) |
| | Alfi_0539 | Hypothetical protein; PFAM: Restriction endonuclease. (285 aa) |
| | Alfi_0551 | Topoisomerase IA; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid. (696 aa) |
| | Alfi_0569 | Hypothetical protein. (356 aa) |
| | Alfi_0591 | PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme. (136 aa) |
| | rpmF | PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; manually curated; Belongs to the bacterial ribosomal protein bL32 family. (61 aa) |
| | Alfi_0671 | Hypothetical protein. (123 aa) |
| | Alfi_0686 | PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Type II intron maturase. (605 aa) |
| | Alfi_0690 | Retron-type reverse transcriptase; PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase). (553 aa) |
| | Alfi_0692 | PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Type II intron maturase. (601 aa) |
| | Alfi_0699 | PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein. (358 aa) |
| | Alfi_0704 | Recombinational DNA repair ATPase (RecF pathway). (636 aa) |
| | Alfi_0705 | PFAM: Protein of unknown function DUF262. (962 aa) |
| | Alfi_0713 | Hypothetical protein. (342 aa) |
| | Alfi_0714 | Hypothetical protein. (499 aa) |
| | Alfi_0720 | PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. (92 aa) |
| | Alfi_0732 | ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family. (690 aa) |
| | Alfi_0786 | Mu-like prophage protein gp36; PFAM: Protein of unknown function (DUF1320). (139 aa) |
| | Alfi_0800 | PFAM: ATPase family associated with various cellular activities (AAA). (285 aa) |
| | Alfi_0852 | Hypothetical protein. (242 aa) |
| | Alfi_0861 | NADPH-dependent glutamate synthase, homotetrameric; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric. (461 aa) |
| | Alfi_0868 | PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region. (711 aa) |
| | Alfi_0869 | O-6-methylguanine DNA methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (165 aa) |
| | Alfi_0945 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. (547 aa) |
| | Alfi_0978 | PFAM: Reverse transcriptase (RNA-dependent DNA polymerase). (426 aa) |
| | Alfi_0997 | PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Type II intron maturase. (605 aa) |
| | Alfi_1007 | PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein. (358 aa) |
| | Alfi_1019 | Hypothetical protein; PFAM: Uncharacterised ACR, COG2135; Belongs to the SOS response-associated peptidase family. (273 aa) |
| | Alfi_1031 | ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family. (690 aa) |
| | Alfi_1036 | Hypothetical protein. (263 aa) |
| | Alfi_1066 | Transporter, CPA2 family; TC 2.A.37. (394 aa) |
| | Alfi_1074 | N-acetyl-beta-hexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain. (615 aa) |
| | Alfi_1077 | N-acetyl-beta-hexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain. (528 aa) |
| | Alfi_1078 | Hypothetical protein. (369 aa) |
| | Alfi_1091 | N-acetyl-beta-hexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2. (623 aa) |
| | Alfi_1109 | N-acetyl-beta-hexosaminidase; PFAM: F5/8 type C domain; Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2. (774 aa) |
| | Alfi_1112 | Pirin-related protein; PFAM: Pirin; Belongs to the pirin family. (238 aa) |
| | Alfi_1113 | Hypothetical protein; Manually curated. (366 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (83 aa) |
| | adk | Adenylate kinase-like kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (190 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (114 aa) |
| | rpsR | SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (92 aa) |
| | Alfi_1128 | DMT(drug/metabolite transporter) superfamily permease; PFAM: EamA-like transporter family. (306 aa) |
| | Alfi_1132 | 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase; Belongs to the 5'-nucleotidase family. (474 aa) |
| | Alfi_1133 | PFAM: Phosphoribulokinase / Uridine kinase family. (556 aa) |
| | rnz | Metal-dependent hydrolase, beta-lactamase superfamily III; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (307 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (448 aa) |
| | recR | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa) |
| | Alfi_1173 | Hypothetical protein. (618 aa) |
| | Alfi_1183 | PFAM: Prephenate dehydratase. (281 aa) |
| | Alfi_1227 | Fe-S oxidoreductase. (257 aa) |
| | nfo | Apurinic endonuclease APN1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (282 aa) |
| | Alfi_1253 | PFAM: Tetratricopeptide repeat. (573 aa) |
| | rpsO | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (90 aa) |
| | Alfi_1275 | PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase family M24; Belongs to the peptidase M24B family. (463 aa) |
| | rpmH | PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; Belongs to the bacterial ribosomal protein bL34 family. (55 aa) |
| | Alfi_1292 | RRM domain-containing RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). (108 aa) |
| | Alfi_1298 | PFAM: Response regulator receiver domain. (122 aa) |
| | Alfi_1314 | PFAM: NAD dependent epimerase/dehydratase family. (319 aa) |
| | Alfi_1325 | N-acetyl-beta-hexosaminidase; PFAM: F5/8 type C domain; Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2. (768 aa) |
| | Alfi_1327 | Arylsulfatase A family protein; PFAM: Sulfatase. (467 aa) |
| | recO | Recombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination. (242 aa) |
| | Alfi_1406 | PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. (163 aa) |
| | rplY | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (189 aa) |
| | leuA | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (506 aa) |
| | Alfi_1453 | Isopropylmalate/homocitrate/citramalate synthase; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; Belongs to the alpha-IPM synthase/homocitrate synthase family. (513 aa) |
| | ilvD | PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. (606 aa) |
| | Alfi_1460 | Ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase. (348 aa) |
| | Alfi_1476 | Hypothetical protein. (413 aa) |
| | Alfi_1478 | Hypothetical protein. (323 aa) |
| | Alfi_1484 | Putative esterase of the alpha-beta hydrolase superfamily; PFAM: Patatin-like phospholipase. (775 aa) |
| | Alfi_1486 | Hypothetical protein. (594 aa) |
| | ybeY | Metalloprotein, YbeY/UPF0054 family; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (143 aa) |
| | Alfi_1490 | PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II. (337 aa) |
| | Alfi_1498 | PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein. (150 aa) |
| | Alfi_1533 | Phytoene dehydrogenase-like oxidoreductase; PFAM: FAD dependent oxidoreductase. (499 aa) |
| | Alfi_1560 | N-acetyl-beta-hexosaminidase; PFAM: F5/8 type C domain; Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2. (686 aa) |
| | Alfi_1564 | PFAM: Tetratricopeptide repeat. (262 aa) |
| | Alfi_1567 | PFAM: ATPase family associated with various cellular activities (AAA). (332 aa) |
| | nth | Endonuclease III, DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (217 aa) |
| | Alfi_1573 | Exopolyphosphatase-like enzyme; PFAM: DHH family; DHHA1 domain. (343 aa) |
| | Alfi_1595 | Putative Zn-dependent hydrolase of beta-lactamase fold protein. (258 aa) |
| | Alfi_1601 | DNA primase; PFAM: CHC2 zinc finger. (287 aa) |
| | Alfi_1615 | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family. (237 aa) |
| | Alfi_1626 | PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric. (151 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (151 aa) |
| | priA | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (751 aa) |
| | Alfi_1634 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (521 aa) |
| | Alfi_1645 | PFAM: Papain family cysteine protease; Peptidase C1-like family; Belongs to the peptidase C1 family. (402 aa) |
| | rplS | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (126 aa) |
| | Alfi_1664 | PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. (182 aa) |
| | argB | N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (255 aa) |
| | argC | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (320 aa) |
| | Alfi_1684 | Acetyltransferase, N-acetylglutamate synthase; PFAM: Acetyltransferase (GNAT) family. (206 aa) |
| | Alfi_1688 | PFAM: Acetyltransferase (GNAT) family. (184 aa) |
| | Alfi_1694 | O(6)-alkylguanine repair protein YbaZ; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase. (100 aa) |
| | rpsL | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (126 aa) |
| | rpsG | Ribosomal protein S7, bacterial/organelle; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (158 aa) |
| | rpsJ | Ribosomal protein S10, bacterial/organelle; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (101 aa) |
| | rplC | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (204 aa) |
| | rplD | 50S ribosomal protein L4, bacterial/organelle; Forms part of the polypeptide exit tunnel. (208 aa) |
| | rplW | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (96 aa) |
| | rplB | Ribosomal protein L2, bacterial/organellar; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (274 aa) |
| | rpsS | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (89 aa) |
| | rplV | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (136 aa) |
| | rpsC | Ribosomal protein S3, bacterial type; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (263 aa) |
| | rplP | Ribosomal protein L16, bacterial/organelle; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (142 aa) |
| | rpmC | PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (62 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (84 aa) |
| | rplN | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (121 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (186 aa) |
| | rpsN | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (98 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplF | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (195 aa) |
| | rplR | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (120 aa) |
| | rpsE | Ribosomal protein S5, bacterial/organelle type; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (172 aa) |
| | rpmD | PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle. (80 aa) |
| | rplO | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (148 aa) |
| | rpmJ | PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (126 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rpsD | Ribosomal protein S4, bacterial/organelle type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (202 aa) |
| | rplQ | PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17. (201 aa) |
| | Alfi_1743 | FAD binding protein. (457 aa) |
| | Alfi_1773 | Putative membrane protein; PFAM: VIT family. (284 aa) |
| | Alfi_1775 | Hypothetical protein; PFAM: Uncharacterised ACR, COG2135; Belongs to the SOS response-associated peptidase family. (228 aa) |
| | Alfi_1785 | PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (305 aa) |
| | Alfi_1791 | Putative Zn-dependent hydrolase of beta-lactamase fold protein. (374 aa) |
| | Alfi_1820 | PFAM: Alpha-L-fucosidase. (436 aa) |
| | cutC-2 | Uncharacterized protein involved in copper resistance; Participates in the control of copper homeostasis. Belongs to the CutC family. (243 aa) |
| | Alfi_1841 | PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein. (98 aa) |
| | Alfi_1850 | Arylsulfatase A family protein; PFAM: Sulfatase. (515 aa) |
| | Alfi_1852 | Arylsulfatase A family protein; PFAM: Sulfatase. (329 aa) |
| | Alfi_1926 | Hypothetical protein. (406 aa) |
| | Alfi_1938 | PFAM: Major Facilitator Superfamily. (435 aa) |
| | Alfi_1969 | DMT(drug/metabolite transporter) superfamily permease; PFAM: EamA-like transporter family. (312 aa) |
| | Alfi_1970 | DMT(drug/metabolite transporter) superfamily permease; PFAM: EamA-like transporter family. (317 aa) |
| | Alfi_2002 | Putative HD superfamily hydrolase; PFAM: HD domain. (221 aa) |
| | rpmG | PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family. (60 aa) |
| | rpmB | PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (77 aa) |
| | Alfi_2027 | Arginase family hydrolase, arginase/agmainase/formiminoglutamate hydrolase; PFAM: Arginase family; Belongs to the arginase family. (346 aa) |
| | Alfi_2032 | PFAM: Protein of unknown function (DUF3127). (122 aa) |
| | Alfi_2035 | PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (88 aa) |
| | rplK | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (146 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (232 aa) |
| | Alfi_2048 | PFAM: Ribosomal protein L10. (174 aa) |
| | rplL | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (125 aa) |
| | Alfi_2055 | PFAM: Aminotransferase class I and II. (398 aa) |
| | Alfi_2056 | PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. (86 aa) |
| | Alfi_2070 | Hypothetical protein. (466 aa) |
| | Alfi_2076 | Glucose inhibited division protein A. (619 aa) |
| | Alfi_2097 | PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (546 aa) |
| | Alfi_2107 | PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Type II intron maturase. (601 aa) |
| | Alfi_2109 | Hypothetical protein. (720 aa) |
| | Alfi_2121 | ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family. (702 aa) |
| | Alfi_2132 | Hypothetical protein; PFAM: Uncharacterised ACR, COG2135; Belongs to the SOS response-associated peptidase family. (273 aa) |
| | Alfi_2135 | Tetratricopeptide repeat protein; Manually curated. (558 aa) |
| | Alfi_2151 | PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein. (352 aa) |
| | Alfi_2157 | PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Type II intron maturase. (601 aa) |
| | Alfi_2217 | Hypothetical protein. (241 aa) |
| | Alfi_2241 | Putative esterase of the alpha-beta hydrolase superfamily; PFAM: Patatin-like phospholipase. (265 aa) |
| | Alfi_2264 | DNA primase; PFAM: CHC2 zinc finger. (336 aa) |
| | Alfi_2265 | Putative P-loop ATPase; PFAM: Virulence-associated protein E. (402 aa) |
| | Alfi_2298 | PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein. (317 aa) |
| | purF | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (473 aa) |
| | purD | Phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; Belongs to the GARS family. (415 aa) |
| | Alfi_2337 | Nicotinate-nucleotide pyrophosphorylase (carboxylating); PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family. (284 aa) |
| | Alfi_2358 | Phosphatidylserine synthase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (257 aa) |
| | Alfi_2378 | PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. (90 aa) |
| | Alfi_2384 | Putative enzyme of heme biosynthesis. (444 aa) |
| | Alfi_2391 | PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal. (718 aa) |
| | rpsU | PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (63 aa) |
| | Alfi_2404 | RagB/SusD family protein; PFAM: SusD family. (532 aa) |
| | Alfi_2451 | DnaK suppressor protein; PFAM: Prokaryotic dksA/traR C4-type zinc finger. (126 aa) |
| | Alfi_2456 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (154 aa) |
| | Alfi_2493 | Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase. (244 aa) |
| | Alfi_2494 | PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region. (145 aa) |
| | ispE | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (270 aa) |
| | dnaG | DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (657 aa) |
| | Alfi_2572 | Hypothetical protein. (202 aa) |
| | Alfi_2592 | Hypothetical protein. (206 aa) |
| | Alfi_2635 | AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-binding enzyme. (566 aa) |
| | ychF | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa) |
| | Alfi_2668 | N-acetyl-beta-hexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain. (547 aa) |
| | guaB | Inosine-5''-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (492 aa) |
| | Alfi_2691 | Hypothetical protein. (316 aa) |
| | Alfi_2692 | PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. (93 aa) |
| | Alfi_2726 | FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB. (481 aa) |
| | Alfi_2728 | PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC. (250 aa) |
| | Alfi_2729 | ABC-type transport system involved in Fe-S cluster assembly, permease component; PFAM: Uncharacterized protein family (UPF0051). (273 aa) |
| | Alfi_2762 | Putative transcriptional regulator with cupin domain; PFAM: Cupin domain. (184 aa) |
| | Alfi_2764 | PFAM: Tetratricopeptide repeat. (662 aa) |
| | Alfi_2784 | PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (183 aa) |
| | Alfi_2818 | Metal-dependent hydrolase, beta-lactamase superfamily I. (261 aa) |
| | Alfi_2829 | PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain. (464 aa) |
| | Alfi_2846 | PFAM: Alpha-L-fucosidase. (434 aa) |
| | Alfi_2854 | TIGR02757 family protein; PFAM: Protein of unknown function (DUF2400); TIGRFAM: TIGR02757 family protein. (261 aa) |
| | Alfi_2859 | PFAM: NAD dependent epimerase/dehydratase family. (322 aa) |
| | Alfi_2871 | Beta-propeller domain-containing protein, methanol dehydrogenase; PFAM: Domain of unknown function (DUF477). (310 aa) |
| | Alfi_2885 | PFAM: Tetratricopeptide repeat. (448 aa) |
| | Alfi_2897 | Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain. (339 aa) |
| | Alfi_2898 | PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase C terminal; Acyl-CoA dehydrogenase, N-terminal domain. (575 aa) |
| | Alfi_2920 | Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (326 aa) |
| | Alfi_2922 | PFAM: 3-oxo-5-alpha-steroid 4-dehydrogenase. (253 aa) |
| | cobB | NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family; Belongs to the sirtuin family. Class III subfamily. (232 aa) |
| | Alfi_2931 | Hypothetical protein. (156 aa) |
| | rplM | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (151 aa) |
| | rpsI | PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. (128 aa) |
| | rpsB | PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family. (313 aa) |
| | Alfi_2983 | PFAM: Protein of unknown function (DUF1271). (73 aa) |
| | Alfi_3016 | PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: carboxynorspermidine decarboxylase. (376 aa) |
| | Alfi_3019 | PFAM: Formiminotransferase domain, N-terminal subdomain; Formiminotransferase-cyclodeaminase; Formiminotransferase domain; TIGRFAM: glutamate formiminotransferase. (565 aa) |
| | Alfi_3035 | Uncharacterized P-loop hydrolase UPF0079; PFAM: PIF1 helicase. (471 aa) |
| | Alfi_3036 | G:T/U mismatch-specific DNA glycosylase. (191 aa) |
| | udk | PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase. (207 aa) |
| | Alfi_3056 | Arylsulfatase A family protein; PFAM: Sulfatase. (498 aa) |
| | Alfi_3095 | Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain. (455 aa) |
| | Alfi_3103 | PFAM: FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase. (245 aa) |
| | Alfi_3117 | Hypothetical protein. (223 aa) |
| | Alfi_3124 | Hypothetical protein. (365 aa) |
| | Alfi_3159 | Putative phosphohydrolase; PFAM: Calcineurin-like phosphoesterase. (389 aa) |
| | Alfi_3160 | Pyrimidine reductase, riboflavin biosynthesis; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region. (358 aa) |
| | Alfi_3169 | Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats). (177 aa) |
| | Alfi_3171 | N-acetyl-beta-hexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain. (718 aa) |
| | Alfi_3178 | PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase. (386 aa) |
| | Alfi_3181 | AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-binding enzyme. (635 aa) |
| | Alfi_3211 | PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Type II intron maturase. (599 aa) |
| | Alfi_3221 | Nitroreductase-like oxidoreductase; PFAM: Nitroreductase family. (200 aa) |
| | Alfi_3227 | Hypothetical protein. (537 aa) |
| | Alfi_3236 | Hypothetical protein; PFAM: Cupin domain; Carboxymuconolactone decarboxylase family. (500 aa) |
| | Alfi_3249 | O-acetylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase. (427 aa) |
| | Alfi_3255 | Hypothetical protein; PFAM: Iron-binding zinc finger CDGSH type; Protein of unknown function (DUF1271). (258 aa) |
| | serC | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (357 aa) |
| | nadD | Nicotinate/nicotinamide nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (265 aa) |
| | Alfi_3290 | Dipeptidase; PFAM: Peptidase family C69. (564 aa) |
| | truA | Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (254 aa) |
