STRINGSTRING
SCAB_0811 SCAB_0811 SCAB_0821 SCAB_0821 CBG68776.1 CBG68776.1 CBG68850.1 CBG68850.1 CBG69017.1 CBG69017.1 CBG69054.1 CBG69054.1 CBG69156.1 CBG69156.1 CBG69426.1 CBG69426.1 CBG69622.1 CBG69622.1 CBG69623.1 CBG69623.1 whiG whiG CBG69812.1 CBG69812.1 CBG69880.1 CBG69880.1 CBG69962.1 CBG69962.1 CBG70039.1 CBG70039.1 prs prs sig1 sig1 CBG70205.1 CBG70205.1 CBG70263.1 CBG70263.1 CBG70264.1 CBG70264.1 CBG70296.1 CBG70296.1 CBG70456.1 CBG70456.1 CBG70487.1 CBG70487.1 CBG70547.1 CBG70547.1 CBG70640.1 CBG70640.1 CBG70958.1 CBG70958.1 CBG71074.1 CBG71074.1 CBG71153.1 CBG71153.1 CBG71155.1 CBG71155.1 CBG71156.1 CBG71156.1 hppA hppA CBG71158.1 CBG71158.1 CBG71159.1 CBG71159.1 CBG71160.1 CBG71160.1 CBG71161.1 CBG71161.1 CBG71171.1 CBG71171.1 CBG71409.1 CBG71409.1 CBG71457.1 CBG71457.1 CBG71515.1 CBG71515.1 CBG71534.1 CBG71534.1 CBG71535.1 CBG71535.1 CBG71536.1 CBG71536.1 CBG71563.1 CBG71563.1 CBG71687.1 CBG71687.1 CBG71720.1 CBG71720.1 CBG71728.1 CBG71728.1 CBG71732.1 CBG71732.1 CBG71781.1 CBG71781.1 CBG71782.1 CBG71782.1 CBG71783.1 CBG71783.1 CBG71784.1 CBG71784.1 tadA tadA CBG71786.1 CBG71786.1 CBG71787.1 CBG71787.1 CBG71922.1 CBG71922.1 CBG71955.1 CBG71955.1 amfC amfC CBG72035.1 CBG72035.1 CBG72076.1 CBG72076.1 CBG72192.1 CBG72192.1 CBG72198.1 CBG72198.1 CBG72279.1 CBG72279.1 CBG72294.1 CBG72294.1 CBG72295.1 CBG72295.1 CBG72296.1 CBG72296.1 CBG72297.1 CBG72297.1 CBG72298.1 CBG72298.1 CBG72299.1 CBG72299.1 CBG72300.1 CBG72300.1 CBG72302.1 CBG72302.1 CBG72507.1 CBG72507.1 CBG72508.1 CBG72508.1 SCAB_5621 SCAB_5621 SCAB_5631 SCAB_5631 CBG72666.1 CBG72666.1 SCAB_5671 SCAB_5671 SCAB_5681 SCAB_5681 SCAB_5691 SCAB_5691 SCAB_5701 SCAB_5701 CBG72735.1 CBG72735.1 CBG72776.1 CBG72776.1 CBG72844.1 CBG72844.1 CBG72893.1 CBG72893.1 SCAB_5961 SCAB_5961 CBG73003.1 CBG73003.1 CBG73004.1 CBG73004.1 CBG73005.1 CBG73005.1 CBG73007.1 CBG73007.1 CBG73008.1 CBG73008.1 CBG73170.1 CBG73170.1 CBG73171.1 CBG73171.1 CBG73172.1 CBG73172.1 CBG73173.1 CBG73173.1 SCAB_6251 SCAB_6251 SCAB_6261 SCAB_6261 SCAB_6271 SCAB_6271 SCAB_6281 SCAB_6281 SCAB_6291 SCAB_6291 CBG73388.1 CBG73388.1 CBG73389.1 CBG73389.1 CBG73588.1 CBG73588.1 CBG73874.1 CBG73874.1 SCAB_7111 SCAB_7111 CBG74387.1 CBG74387.1 bldD bldD SCAB_7541 SCAB_7541 CBG74810.1 CBG74810.1 CBG74876.1 CBG74876.1 CBG74977.1 CBG74977.1 CBG75025.1 CBG75025.1 CBG75053.1 CBG75053.1 CBG75055.1 CBG75055.1 SCAB_8231 SCAB_8231 CBG75248.1 CBG75248.1 CBG75279.1 CBG75279.1 CBG75447.1 CBG75447.1 CBG75448.1 CBG75448.1 CBG75532.1 CBG75532.1 CBG75533.1 CBG75533.1 CBG75534.1 CBG75534.1 CBG75535.1 CBG75535.1 CBG75536.1 CBG75536.1 CBG75537.1 CBG75537.1 CBG75538.1 CBG75538.1 CBG75539.1 CBG75539.1 CBG75540.1 CBG75540.1 CBG75541.1 CBG75541.1 CBG75542.1 CBG75542.1 CBG75543.1 CBG75543.1 SCAB_8601 SCAB_8601 CBG75545.1 CBG75545.1 SCAB_8651 SCAB_8651 CBG75647.1 CBG75647.1 CBG75648.1 CBG75648.1 CBG75649.1 CBG75649.1 CBG75650.1 CBG75650.1 CBG75651.1 CBG75651.1 CBG75652.1 CBG75652.1 CBG75653.1 CBG75653.1 SCAB_8781 SCAB_8781 SCAB_8891 SCAB_8891 CBG75897.1 CBG75897.1 CBG75927.1 CBG75927.1 SCAB_9161 SCAB_9161
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SCAB_0811Putative transposase; PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2. (199 aa)
SCAB_0821Conserved hypothetical protein; PAS domain may indicate role in signal detection. (211 aa)
CBG68776.1Conserved hypothetical protein. (819 aa)
CBG68850.1Putative sigma factor; Belongs to the sigma-70 factor family. (262 aa)
CBG69017.1Putative hypothetical protein. (761 aa)
CBG69054.1Putative regulatory protein. (144 aa)
CBG69156.1Putative ATP-binding protein; TTA-Leu codon(s) 13 may indicate regulation by BldA. (184 aa)
CBG69426.1Putative ATP-binding protein. (160 aa)
CBG69622.1Putative sensory histidine kinase. (1793 aa)
CBG69623.1Putative regulatory protein; Cluster 0572 with SCAB61501. (912 aa)
whiGSporulation-specific sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (258 aa)
CBG69812.1Putative membrane associated phophodiesterase. (1016 aa)
CBG69880.1Putative regulator. (171 aa)
CBG69962.1Putative anti-anti-sigma-factor; Belongs to the anti-sigma-factor antagonist family. (107 aa)
CBG70039.1Conserved hypothetical protein. (131 aa)
prsAnti-sigma factor; PMID: 14597396; PMID: 10913862. (141 aa)
sig1Putative sigma factor; PMID: 10913862; PMID: 14597396; Belongs to the sigma-70 factor family. (388 aa)
CBG70205.1Conserved hypothetical protein. (182 aa)
CBG70263.1Putative stage II sporulation protein E; PMID: 8885273. (846 aa)
CBG70264.1Conserved hypothetical protein. (135 aa)
CBG70296.1Conserved hypothetical protein; Lantibiotics biosynthesis. (144 aa)
CBG70456.1Conserved hypothetical protein; PMID: 1173148; PMID: 8885273. (669 aa)
CBG70487.1Conserved hypothetical protein. (131 aa)
CBG70547.1Conserved hypothetical protein. (381 aa)
CBG70640.1Conserved hypothetical protein. (115 aa)
CBG70958.1Conserved hypothetical protein. (164 aa)
CBG71074.1Putative regulator. (148 aa)
CBG71153.1Putative membrane protein (fragment). (65 aa)
CBG71155.1Putative ribonucleotide methyltransferase; Belongs to the methyltransferase superfamily. (510 aa)
CBG71156.1Putative secreted protein. (203 aa)
hppAPutative pyrophosphate-energized proton pump; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force. (801 aa)
CBG71158.1Hypothetical protein. (46 aa)
CBG71159.1Conserved hypothetical protein; PMID: 15793135. (144 aa)
CBG71160.1Anti-anti-sigma factor BldG; Belongs to the anti-sigma-factor antagonist family. (113 aa)
CBG71161.1Putative ATP-dependent RNA helicase; TTA-Leu codon(s) 6 may indicate regulation by BldA. (824 aa)
CBG71171.1Conserved hypothetical protein; TTA-Leu codon(s) 918 may indicate regulation by BldA. (1040 aa)
CBG71409.1Putative protein phosphatase; PAS domain may indicate role in signal detection. (839 aa)
CBG71457.1Putative regulatory protein phosphatase; PMID:11731481; TTA-Leu codon(s) 104 may indicate regulation by BldA. (975 aa)
CBG71515.1Putative regulatory protein phosphatase; PAS domain may indicate role in signal detection. (1017 aa)
CBG71534.1Putative secreted protein. (417 aa)
CBG71535.1Putative regulatory protein phosphatase. (422 aa)
CBG71536.1Putative integral membrane protein. (146 aa)
CBG71563.1Putative regulatory protein phosphatase; TTA-Leu codon(s) 540 may indicate regulation by BldA. (748 aa)
CBG71687.1Putative SsgA-like sporulation/cell division regulator; PMID: 9141673; PMID:12562798. (145 aa)
CBG71720.1Conserved hypothetical protein. (150 aa)
CBG71728.1Conserved hypothetical protein. (528 aa)
CBG71732.1Putative ATP-binding protein. (180 aa)
CBG71781.1SigH-like stress response sigma factor; PMID:14597396; Belongs to the sigma-70 factor family. (306 aa)
CBG71782.1SigF-like sigma factor; PMID: 7476207; PMID:14597396; Belongs to the sigma-70 factor family. (287 aa)
CBG71783.1Conserved hypothetical protein. (97 aa)
CBG71784.1Putative secreted protein. (58 aa)
tadAPutative deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (183 aa)
CBG71786.1Conserved hypothetical protein. (174 aa)
CBG71787.1Hypothetical protein. (93 aa)
CBG71922.1Conserved hypothetical protein. (154 aa)
CBG71955.1Putative integral membrane protein. (367 aa)
amfCPutative aerial mycelium formation regulatory protein; PMID: 7592414; S. coelicolor and S. griseus amfC only 60%, this CDS has same level of match to both. (211 aa)
CBG72035.1Putative regulatory phosphatase. (463 aa)
CBG72076.1Conserved hypothetical protein. (587 aa)
CBG72192.1Putative anti-sigma-factor-binding protein; Belongs to the anti-sigma-factor antagonist family. (162 aa)
CBG72198.1Putative DNA-binding protein. (197 aa)
CBG72279.1Conserved hypothetical protein. (154 aa)
CBG72294.1Conserved hypothetical protein. (191 aa)
CBG72295.1Conserved hypothetical protein. (115 aa)
CBG72296.1Putative secreted protein; Doubtful CDS. (105 aa)
CBG72297.1Conserved hypothetical protein. (206 aa)
CBG72298.1Putative regulatory phosphatase. (397 aa)
CBG72299.1Conserved hypothetical protein. (207 aa)
CBG72300.1Conserved hypothetical protein. (122 aa)
CBG72302.1Conserved hypothetical protein. (107 aa)
CBG72507.1Putative anti sigma factor antagonist; PMID:6088674; PMID:15793135; Belongs to the anti-sigma-factor antagonist family. (122 aa)
CBG72508.1Putative regulator of Sig15. (141 aa)
SCAB_5621Putative ATPase; PMID:15112998. (159 aa)
SCAB_5631Putative anti-sigma-factor antagonist; PMID:15793135; Belongs to the anti-sigma-factor antagonist family. (122 aa)
CBG72666.1Putative SsgA-like regulator; PMID:9141673. (137 aa)
SCAB_5671Putative secreted protein. (369 aa)
SCAB_5681Putative secreted protein. (352 aa)
SCAB_5691Conserved hypothetical protein. (691 aa)
SCAB_5701Putative regulator. (157 aa)
CBG72735.1Conserved hypothetical protein; PMID:15313224. (210 aa)
CBG72776.1Putative diguanylate cyclase. (633 aa)
CBG72844.1Putative regulator; PMID:15793135; db matches only to second domain: none with same 2*STAS domain architecture; may bind NTPs PMID:10662676; Belongs to the anti-sigma-factor antagonist family. (283 aa)
CBG72893.1Conserved hypothetical protein. (134 aa)
SCAB_5961Putative hypothetical protein. (825 aa)
CBG73003.1Putative transposase; Cluster 0138: SCAB35111, SCAB57961, SCAB59871, SCAB87221; no Pfam: evidence for transposition inferred from 4 exact duplicates in genome; TTA-Leu codon(s) 13, 36 may indicate regulation by BldA. (363 aa)
CBG73004.1Conserved hypothetical protein. (414 aa)
CBG73005.1Hypothetical protein. (61 aa)
CBG73007.1Putative regulatory protein phosphatase; PMID: 5561847. (391 aa)
CBG73008.1Conserved hypothetical protein. (241 aa)
CBG73170.1Conserved hypothetical protein; Strong matches to receiver domain of two component system response regulator, but no DNA binding domain; cluster 0571 with SCAB25141; TTA-Leu codon(s) 121 may indicate regulation by BldA. (190 aa)
CBG73171.1Putative sensor kinase. (1391 aa)
CBG73172.1Putative regulatory protein; Cluster 0572 with SCAB25161. (741 aa)
CBG73173.1Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (410 aa)
SCAB_6251Putative anti-anti-sigma-factor; Belongs to the anti-sigma-factor antagonist family. (112 aa)
SCAB_6261Putative regulatory protein. (469 aa)
SCAB_6271Putative hydrolase. (267 aa)
SCAB_6281Conserved hypothetical protein. (145 aa)
SCAB_6291Conserved hypothetical protein. (398 aa)
CBG73388.1Putative regulator of sigma factor; PMID:9826694; PMID: 15292136. (168 aa)
CBG73389.1Putative membrane protein. (141 aa)
CBG73588.1Conserved hypothetical protein. (171 aa)
CBG73874.1Putative two-component system response regulator. (173 aa)
SCAB_7111Putative hypothetical protein. (795 aa)
CBG74387.1Putative phosphatase. (320 aa)
bldDBldD regulator of morphogenesis and anitbiotic production; PMID:9515925; PMID:15601697. (166 aa)
SCAB_7541Conserved hypothetical protein. (710 aa)
CBG74810.1Conserved hypothetical protein. (722 aa)
CBG74876.1Conserved hypothetical protein; PAS domain may indicate role in signal detection. (447 aa)
CBG74977.1Conserved hypothetical protein. (697 aa)
CBG75025.1Putative integral membrane protein. (375 aa)
CBG75053.1Putative membrane protein. (377 aa)
CBG75055.1Conserved hypothetical protein; PAS domain may indicate role in signal detection. (692 aa)
SCAB_8231Conserved hypothetical protein. (796 aa)
CBG75248.1Conserved hypothetical protein. (153 aa)
CBG75279.1Conserved hypothetical protein; PAS domain may indicate role in signal detection. (443 aa)
CBG75447.1Conserved hypothetical protein; Cluster 0884 with SCAB87091; TTA-Leu codon(s) 62 may indicate regulation by BldA. (472 aa)
CBG75448.1Putative regulator. (137 aa)
CBG75532.1Conserved hypothetical protein. (581 aa)
CBG75533.1Conserved hypothetical protein. (348 aa)
CBG75534.1Putative anti-sigma factor (fragment). (146 aa)
CBG75535.1Anti-sigma factor antagonist. (146 aa)
CBG75536.1Putative regulatory protein. (299 aa)
CBG75537.1Conserved hypothetical protein. (395 aa)
CBG75538.1Putative regulatory protein. (157 aa)
CBG75539.1Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family. (134 aa)
CBG75540.1Putative sigma factor; Belongs to the sigma-70 factor family. (275 aa)
CBG75541.1Probable sigma factor; Belongs to the sigma-70 factor family. (280 aa)
CBG75542.1Conserved hypothetical protein. (100 aa)
CBG75543.1Conserved hypothetical protein. (155 aa)
SCAB_8601Putative regulatory protein. (806 aa)
CBG75545.1Putative DNA-binding protein. (574 aa)
SCAB_8651Conserved hypothetical protein. (715 aa)
CBG75647.1Putative two-component system sensory histidine kinase. (1424 aa)
CBG75648.1Conserved hypothetical protein; Cluster 0884 with SCAB85001. (849 aa)
CBG75649.1Conserved hypothetical protein. (134 aa)
CBG75650.1Sigma factor; Many similar; Belongs to the sigma-70 factor family. (283 aa)
CBG75651.1Conserved hypothetical protein. (119 aa)
CBG75652.1Putative regulator of sig8. (309 aa)
CBG75653.1Conserved hypothetical protein. (142 aa)
SCAB_8781Conserved hypothetical protein; PMID:12107139; PMID:10627032; Belongs to the anti-sigma-factor antagonist family. (105 aa)
SCAB_8891Hypothetical protein. (804 aa)
CBG75897.1Putative integral membrane protein. (346 aa)
CBG75927.1Putative two-component sensor kinase. (1000 aa)
SCAB_9161Putative anti-anti-sigma-factor; TTA-Leu codon(s) 127 may indicate regulation by BldA; Belongs to the anti-sigma-factor antagonist family. (127 aa)
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.