STRINGSTRING
SCAB_0721 SCAB_0721 CBG68221.1 CBG68221.1 CBG68263.1 CBG68263.1 CBG68315.1 CBG68315.1 CBG68316.1 CBG68316.1 CBG68356.1 CBG68356.1 CBG68397.1 CBG68397.1 CBG68431.1 CBG68431.1 CBG68538.1 CBG68538.1 CBG68543.1 CBG68543.1 CBG68548.1 CBG68548.1 CBG68554.1 CBG68554.1 CBG68563.1 CBG68563.1 CBG68615.1 CBG68615.1 CBG68628.1 CBG68628.1 CBG68653.1 CBG68653.1 CBG68896.1 CBG68896.1 CBG69018.1 CBG69018.1 CBG69063.1 CBG69063.1 CBG69093.1 CBG69093.1 rarC1 rarC1 CBG69147.1 CBG69147.1 SCAB_20351 SCAB_20351 CBG69196.1 CBG69196.1 CBG69478.1 CBG69478.1 CBG69480.1 CBG69480.1 CBG69528.1 CBG69528.1 dapB dapB CBG69656.1 CBG69656.1 CBG69775.1 CBG69775.1 CBG69779.1 CBG69779.1 CBG70072.1 CBG70072.1 CBG70260.1 CBG70260.1 rarC2 rarC2 SCAB_3291 SCAB_3291 SCAB_3301 SCAB_3301 CBG70618.1 CBG70618.1 CBG70619.1 CBG70619.1 dhsA dhsA CBG70693.1 CBG70693.1 CBG70708.1 CBG70708.1 CBG70893.1 CBG70893.1 nadB nadB CBG71300.1 CBG71300.1 CBG71446.1 CBG71446.1 CBG71569.1 CBG71569.1 CBG71602.1 CBG71602.1 SCAB_4661 SCAB_4661 CBG71776.1 CBG71776.1 CBG72119.1 CBG72119.1 CBG72155.1 CBG72155.1 CBG72171.1 CBG72171.1 CBG72196.1 CBG72196.1 CBG72197.1 CBG72197.1 CBG72201.1 CBG72201.1 CBG72217.1 CBG72217.1 fadE fadE cofE cofE CBG72777.1 CBG72777.1 acdH acdH fadE7 fadE7 CBG72856.1 CBG72856.1 CBG73173.1 CBG73173.1 CBG73229.1 CBG73229.1 CBG73307.1 CBG73307.1 CBG73308.1 CBG73308.1 CBG73349.1 CBG73349.1 CBG73408.1 CBG73408.1 CBG73650.1 CBG73650.1 CBG73861.1 CBG73861.1 CBG73862.1 CBG73862.1 CBG74126.1 CBG74126.1 CBG74186.1 CBG74186.1 CBG74198.1 CBG74198.1 CBG74208.1 CBG74208.1 CBG74257.1 CBG74257.1 CBG74272.1 CBG74272.1 CBG74280.1 CBG74280.1 rarC3 rarC3 CBG74412.1 CBG74412.1 SCAB_7511 SCAB_7511 pyrD pyrD acd acd CBG74587.1 CBG74587.1 CBG74682.1 CBG74682.1 CBG74686.1 CBG74686.1 CBG74828.1 CBG74828.1 CBG74836.1 CBG74836.1 CBG74837.1 CBG74837.1 CBG74846.1 CBG74846.1 SCAB_7891 SCAB_7891 rarC4 rarC4 CBG74957.1 CBG74957.1 SCAB_8271 SCAB_8271 CBG75231.1 CBG75231.1 CBG75346.1 CBG75346.1 fadE26 fadE26 CBG75466.1 CBG75466.1 CBG75882.1 CBG75882.1 fadE20 fadE20 CBG75886.1 CBG75886.1 SCAB_9811 SCAB_9811
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SCAB_0721Putative oxidoreductase; PF00441 and PF08028 fatty acid oxidation; may suggest role in secondary metabolite synthesis for instance PMID: 15942003. (175 aa)
CBG68221.1Conserved hypothetical protein. (175 aa)
CBG68263.1POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN. (270 aa)
CBG68315.1Putative reductase flavoprotein subunit. (652 aa)
CBG68316.1Putative cytochrome B subunit. (219 aa)
CBG68356.1Conserved hypothetical protein; PMID:12029035. (395 aa)
CBG68397.1Putative alcohol dehydrogenase; PMID:9171435; PMID:8226615. (356 aa)
CBG68431.1RarC (conservon) homolog; PMID: 12657469; partial conservon. (123 aa)
CBG68538.1POSSIBLE OXIDOREDUCTASE. (387 aa)
CBG68543.1Conserved hypothetical protein; PMID:12183628; cluster 0385 with SCAB13961. (412 aa)
CBG68548.1Conserved hypothetical protein; PMID:12183628; cluster 0385 with SCAB13891. (452 aa)
CBG68554.1Putative hydrolase. (425 aa)
CBG68563.1Putative alcohol dehydrogenase; PMID:9171435; PMID:8226615. (353 aa)
CBG68615.1Putative oxidoreductase. (417 aa)
CBG68628.1Putative POSSIBLE OXIDOREDUCTASE. (438 aa)
CBG68653.1Putative POSSIBLE OXIDOREDUCTASE. (434 aa)
CBG68896.1Putative acyl-CoA dehydrogenase. (401 aa)
CBG69018.1Conserved hypothetical protein. (143 aa)
CBG69063.1Putative oxidoreductase. (430 aa)
CBG69093.1Putative acyl-CoA dehydrogenase. (532 aa)
rarC1RarC (conservon) homologue; Conservon. (119 aa)
CBG69147.1RarC (conservon) homolog; PMID: 12657469; truncated conservon; TTA-Leu codon(s) 14 may indicate regulation by BldA. (122 aa)
SCAB_20351Hypothetical protein (fragment). (411 aa)
CBG69196.1Putative oxidoreductase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (494 aa)
CBG69478.1Putative alcohol dehydrogenase; PMID:9171435; PMID:8226615. (359 aa)
CBG69480.1Putative oxidoreductase; PMID: 15357313; PMID: 11157954; PMID: 10692350. (417 aa)
CBG69528.1FAD-dependent oxidoreductase. (439 aa)
dapBPutative dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (250 aa)
CBG69656.1Putative acyl CoA dehydrogenase. (646 aa)
CBG69775.1RarC (conservon) homolog; PMID: 12657469; cluster 0585 with SCAB26761; truncated conservon. (132 aa)
CBG69779.1RarC (conservon) homolog; PMID: 12657469; cluster 0585 with SCAB26711; truncated conservon. (189 aa)
CBG70072.1Conserved hypothetical protein; PMID: 12657469; related to conservon. (174 aa)
CBG70260.1Putative succinate dehydrogenase flavoprotein subunit. (649 aa)
rarC2RarC (conservon) homologue; PMID: 12657469. (110 aa)
SCAB_3291Putative oxidoreductase; Cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921. (603 aa)
SCAB_3301Putative oxidoreductase; Cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921. (570 aa)
CBG70618.1Putative succinate dehydrogenase membrane subunit. (110 aa)
CBG70619.1Putative succinate dehydrogenase membrane subunit. (163 aa)
dhsAPutative succinate dehydrogenase flavoprotein subunit. (585 aa)
CBG70693.1Putative oxidoreductase. (160 aa)
CBG70708.1Putative nucleotide-sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (402 aa)
CBG70893.1Putative oxidoreductase. (430 aa)
nadBL-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (571 aa)
CBG71300.1Conserved hypothetical protein. (137 aa)
CBG71446.1Putative FMN-binding protein. (141 aa)
CBG71569.1Putative acyl-CoA dehydrogenase. (608 aa)
CBG71602.1Putative acyl-CoA dehydrogenase. (413 aa)
SCAB_4661Conserved hypothetical protein; Partial conservon. (121 aa)
CBG71776.1Putative ATP binding protein. (154 aa)
CBG72119.1Conserved hypothetical protein. (152 aa)
CBG72155.1Conserved hypothetical protein; PMID:12657469; conservon. (115 aa)
CBG72171.1Putative acyl-CoA dehydrogenase. (387 aa)
CBG72196.1Putative oxidoreductase. (376 aa)
CBG72197.1Putative secreted oxidoreductase. (358 aa)
CBG72201.1Putative oxidoreductase. (388 aa)
CBG72217.1Putative oxidoreductase. (442 aa)
fadEacyl-CoA dehydrogenase. (385 aa)
cofEPutative F420-0:gamma-glutamyl ligase; Bifunctional enzyme that catalyzes the GTP-dependent successive addition of two or more gamma-linked L-glutamates to the L- lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives, and the FMNH2- dependent reduction of dehydro-F420-0 to form F420-0. (434 aa)
CBG72777.1Putative secreted protein. (445 aa)
acdHacyl-CoA dehydrogenase. (389 aa)
fadE7acyl-CoA dehydrogenase. (385 aa)
CBG72856.1Conserved hypothetical protein. (329 aa)
CBG73173.1Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (410 aa)
CBG73229.1Putative dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (384 aa)
CBG73307.1Putative type I polyketide synthase component; Cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921. (640 aa)
CBG73308.1Putative type I polyketide synthase component; PMID:14742212; PMID:12791134; cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921. (599 aa)
CBG73349.1Putative oxidoreductase. (578 aa)
CBG73408.1Putative oxidoreductase. (355 aa)
CBG73650.1Conserved hypothetical protein. (171 aa)
CBG73861.1Putative oxidoreductase. (325 aa)
CBG73862.1Putative oxidoreductase. (379 aa)
CBG74126.1Putative enoyl-(acyl-carrier-protein) reductase; PMID:8284673. (255 aa)
CBG74186.1Putative secreted prephenate dehydrogenase/chorismate mutase; PMID:12060705; PMID:10770754; PMID:12480894; Cterm duplicated twice downstream: see SCAB71961 and SCAB71971. (361 aa)
CBG74198.1Putative membrane protein. (227 aa)
CBG74208.1Putative acyl-CoA dehydrogenase. (396 aa)
CBG74257.1Putative acyl-CoA dehydrogenase. (383 aa)
CBG74272.1Putative acyl-CoA dehydrogenase. (407 aa)
CBG74280.1Putative FAD-binding protein. (551 aa)
rarC3RarC (conservon) homolog; PMID:12657469; conservon. (138 aa)
CBG74412.1Putative FMN-binding protein. (195 aa)
SCAB_7511Conserved hypothetical protein. (155 aa)
pyrDDihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (377 aa)
acdacyl-CoA dehydrogenase. (399 aa)
CBG74587.1RarC (conservon) homolog; PMID: 12657469; truncated conservon. (131 aa)
CBG74682.1Hypothetical protein; No significant db matches; TTA-Leu codon(s) 45 may indicate regulation by BldA. (99 aa)
CBG74686.1Putative oxidoreductase. (371 aa)
CBG74828.1Putative acyl-CoA dehydrogenase. (408 aa)
CBG74836.1Putative acyl-CoA dehydrogenase. (394 aa)
CBG74837.1Putative acyl-CoA dehydrogenase. (364 aa)
CBG74846.1RarC (conservon) homologue; PMID: 12657469; truncated conservon. (118 aa)
SCAB_7891Putative oxygen-independent coproporphyrinogen III oxidase. (456 aa)
rarC4RarC (conservon) homologue; Conservon; TTA-Leu codon(s) 14 may indicate regulation by BldA. (126 aa)
CBG74957.1RarC (conservon) homolog; PMID: 12657469; partial conservon. (145 aa)
SCAB_8271Conserved hypothetical protein. (129 aa)
CBG75231.1Putative hydrogenase. (401 aa)
CBG75346.1Putative methoxymalonate biosynthesis protein; PMID:16207901; PMID:16085885; PMID:12060743. (371 aa)
fadE26Putative acyl-coA dehydrogenase. (392 aa)
CBG75466.1Conserved hypothetical protein. (347 aa)
CBG75882.1Conserved hypothetical protein. (162 aa)
fadE20PROBABLE ACYL-CoA DEHYDROGENASE FADE20. (381 aa)
CBG75886.1Putative oxidoreductase. (343 aa)
SCAB_9811Putative precorrin-6X reductase. (247 aa)
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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