STRINGSTRING
CBG68184.1 CBG68184.1 CBG68257.1 CBG68257.1 CBG68330.1 CBG68330.1 CBG68747.1 CBG68747.1 CBG68779.1 CBG68779.1 CBG68850.1 CBG68850.1 CBG69445.1 CBG69445.1 hrdB hrdB whiG whiG CBG69955.1 CBG69955.1 SCAB_2871 SCAB_2871 CBG70038.1 CBG70038.1 sig1 sig1 sigR sigR CBG70217.1 CBG70217.1 CBG70483.1 CBG70483.1 CBG70484.1 CBG70484.1 CBG70531.1 CBG70531.1 SCAB_3451 SCAB_3451 SCAB_3461 SCAB_3461 CBG70571.1 CBG70571.1 CBG70582.1 CBG70582.1 CBG70609.1 CBG70609.1 CBG70611.1 CBG70611.1 CBG70652.1 CBG70652.1 CBG70669.1 CBG70669.1 CBG70711.1 CBG70711.1 CBG70723.1 CBG70723.1 CBG70795.1 CBG70795.1 CBG70992.1 CBG70992.1 SCAB_3921 SCAB_3921 CBG71014.1 CBG71014.1 sigE sigE CBG71122.1 CBG71122.1 CBG71230.1 CBG71230.1 CBG71235.1 CBG71235.1 SCAB_4351 SCAB_4351 CBG71522.1 CBG71522.1 CBG71525.1 CBG71525.1 CBG71526.1 CBG71526.1 CBG71529.1 CBG71529.1 CBG71654.1 CBG71654.1 SCAB_47081 SCAB_47081 SCAB_4721 SCAB_4721 CBG71781.1 CBG71781.1 CBG71782.1 CBG71782.1 CBG71963.1 CBG71963.1 CBG72191.1 CBG72191.1 CBG72222.1 CBG72222.1 CBG72224.1 CBG72224.1 CBG72287.1 CBG72287.1 CBG72288.1 CBG72288.1 CBG72291.1 CBG72291.1 CBG72292.1 CBG72292.1 hrdD hrdD litS litS CBG72505.1 CBG72505.1 CBG72506.1 CBG72506.1 CBG72616.1 CBG72616.1 SCAB_5671 SCAB_5671 CBG72980.1 CBG72980.1 CBG73254.1 CBG73254.1 hrdA hrdA SCAB_6391 SCAB_6391 CBG73556.1 CBG73556.1 CBG73584.1 CBG73584.1 CBG74009.1 CBG74009.1 CBG74052.1 CBG74052.1 CBG74054.1 CBG74054.1 CBG74063.1 CBG74063.1 CBG74101.1 CBG74101.1 SCAB_7181 SCAB_7181 CBG74235.1 CBG74235.1 CBG74420.1 CBG74420.1 CBG74765.1 CBG74765.1 CBG74915.1 CBG74915.1 CBG75029.1 CBG75029.1 CBG75108.1 CBG75108.1 CBG75160.1 CBG75160.1 CBG75253.1 CBG75253.1 CBG75457.1 CBG75457.1 CBG75540.1 CBG75540.1 CBG75541.1 CBG75541.1 CBG75645.1 CBG75645.1 CBG75650.1 CBG75650.1 SCAB_8831 SCAB_8831 SCAB_9641 SCAB_9641
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CBG68184.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (168 aa)
CBG68257.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)
CBG68330.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
CBG68747.1Longer than usual sigma factor; Belongs to the sigma-70 factor family. (1033 aa)
CBG68779.1Hypothetical protein; No db matches. (91 aa)
CBG68850.1Putative sigma factor; Belongs to the sigma-70 factor family. (262 aa)
CBG69445.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (166 aa)
hrdBMajor vegetative sigma factor HrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (516 aa)
whiGSporulation-specific sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (258 aa)
CBG69955.1Putative ATP/GTP-binding protein, doubtful CDS. (113 aa)
SCAB_2871Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)
CBG70038.1Conserved hypothetical protein. (286 aa)
sig1Putative sigma factor; PMID: 10913862; PMID: 14597396; Belongs to the sigma-70 factor family. (388 aa)
sigRPutative oxidative stress sigma factor; PMID: 10428967; PMID: 9755177; Belongs to the sigma-70 factor family. ECF subfamily. (223 aa)
CBG70217.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (219 aa)
CBG70483.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (238 aa)
CBG70484.1Conserved hypothetical protein. (334 aa)
CBG70531.1Putative DNA-binding protein. (164 aa)
SCAB_3451Conserved hypothetical protein. (238 aa)
SCAB_3461Putative membrane protein; No significant db matches. (198 aa)
CBG70571.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (251 aa)
CBG70582.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (334 aa)
CBG70609.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (228 aa)
CBG70611.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (232 aa)
CBG70652.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)
CBG70669.1Conserved hypothetical protein. (328 aa)
CBG70711.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
CBG70723.1Putative sigma-like transcription regulator; Belongs to the sigma-70 factor family. (434 aa)
CBG70795.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (198 aa)
CBG70992.1AdsA-like sigma factor; PMID:10913094; AdsA is regulated by AdpA in the A factor cascade in S. griseus; Belongs to the sigma-70 factor family. ECF subfamily. (258 aa)
SCAB_3921Putative sigma factor; Belongs to the sigma-70 factor family. (314 aa)
CBG71014.1Alanine-rich hypothetical protein. (572 aa)
sigESigE-like sigma factor; PMID:11342219; PMID: 9004230; S1 and characterisation, PMID:11342219; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
CBG71122.1Conserved hypothetical protein. (505 aa)
CBG71230.1Putative sigma factor; PMID: 16085885; Belongs to the sigma-70 factor family. ECF subfamily. (213 aa)
CBG71235.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
SCAB_4351Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
CBG71522.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (178 aa)
CBG71525.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
CBG71526.1Putative membrane protein. (278 aa)
CBG71529.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
CBG71654.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (236 aa)
SCAB_47081Conserved hypothetical protein (fragment); Pseudo missing stop codon - gene fragment; Belongs to the sigma-70 factor family. ECF subfamily. (156 aa)
SCAB_4721Conserved hypothetical protein. (382 aa)
CBG71781.1SigH-like stress response sigma factor; PMID:14597396; Belongs to the sigma-70 factor family. (306 aa)
CBG71782.1SigF-like sigma factor; PMID: 7476207; PMID:14597396; Belongs to the sigma-70 factor family. (287 aa)
CBG71963.1Putative regulator; Belongs to the sigma-70 factor family. ECF subfamily. (613 aa)
CBG72191.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
CBG72222.1Putative sigma factor; No close matches in S. coelicolor or S. avermitilis; Belongs to the sigma-70 factor family. ECF subfamily. (222 aa)
CBG72224.1Putative secreted protein. (442 aa)
CBG72287.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (197 aa)
CBG72288.1Conserved hypothetical protein. (312 aa)
CBG72291.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (214 aa)
CBG72292.1Putative membrane protein. (364 aa)
hrdDSigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (332 aa)
litSPutative sigma factor; PMID:15716454; cluster 0758 with SCAB85121; carotenoid pigment gene cluster; Belongs to the sigma-70 factor family. ECF subfamily. (207 aa)
CBG72505.1Conserved hypothetical protein. (727 aa)
CBG72506.1SigL-like sigma factor; PMID:14597396; PMID:9115095; PMID:10071227; PMID:9826694; PMID:15292136; PMID:7770044; PMID:10517579; Belongs to the sigma-70 factor family. (304 aa)
CBG72616.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
SCAB_5671Putative secreted protein. (369 aa)
CBG72980.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
CBG73254.1Conserved hypothetical protein; No full length db matches; N-term PF04542 match; Belongs to the sigma-70 factor family. ECF subfamily. (537 aa)
hrdAPrincipal sigma factor HrdA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (387 aa)
SCAB_6391Putative hydrolase. (609 aa)
CBG73556.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
CBG73584.1Putative sigma factor; Belongs to the sigma-70 factor family. (208 aa)
CBG74009.1Putative sigma factor; PMID:12837387; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
CBG74052.1Putative secreted protein. (383 aa)
CBG74054.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa)
CBG74063.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)
CBG74101.1Putative membrane-associated DNA-binding protein; PF04545/PF08281 at Cterm: this protein may bind -35 element of Sigma-70 promoter; Belongs to the sigma-70 factor family. ECF subfamily. (220 aa)
SCAB_7181Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
CBG74235.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)
CBG74420.1Conserved hypothetical similar to sigma factor; No automatic HMMPfams: E-values for PF04542(0.0055) PF08281(0.18). (186 aa)
CBG74765.1Putative sigma factor; PMID:12446651; PMID:15112993; Belongs to the sigma-70 factor family. (295 aa)
CBG74915.1Conserved hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily. (246 aa)
CBG75029.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (186 aa)
CBG75108.1Putative sigma factor; Belongs to the sigma-70 factor family. (315 aa)
CBG75160.1Putative secreted pectate lyase; PMID:8577252; TTA-Leu codon(s) 58 may indicate regulation by BldA. (402 aa)
CBG75253.1Putative integral membrane protein; TTA-Leu codon(s) 112 may indicate regulation by BldA. (817 aa)
CBG75457.1Putative sigma factor; Cluster 0758 with SCAB5471; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)
CBG75540.1Putative sigma factor; Belongs to the sigma-70 factor family. (275 aa)
CBG75541.1Probable sigma factor; Belongs to the sigma-70 factor family. (280 aa)
CBG75645.1Putative sigma factor; Belongs to the sigma-70 factor family. (385 aa)
CBG75650.1Sigma factor; Many similar; Belongs to the sigma-70 factor family. (283 aa)
SCAB_8831Putative hydrolase. (616 aa)
SCAB_9641Putative sigma factor; Belongs to the sigma-70 factor family. (308 aa)
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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