(45 nodes) GroES-like superfamily network (Streptomyces scabiei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG68892.1	Crotonyl CoA reductase. (445 aa)
	SCAB_9581	Putative zinc-binding alcohol dehydrogenase. (346 aa)
	SCAB_9131	Probable zinc-binding alcohol dehydrogenase. (369 aa)
	CBG75886.1	Putative oxidoreductase. (343 aa)
	CBG75847.1	Putative dehydrogenase. (357 aa)
	CBG75774.1	Putative dehydrogenase. (349 aa)
	CBG75420.1	Putative alcohol dehydrogenase. (98 aa)
	SCAB_8471	Putative oxidoreductase. (378 aa)
	CBG75341.1	Putative type I polyketide synthase. (3919 aa)
	CBG75266.1	Putative zinc-containing dehydrogenase. (336 aa)
	CBG74930.1	Putative oxidoreductase; PMID:9031628; PMID:15123265; PMID:10542184; related to cfa8b?. (471 aa)
	CBG74926.1	Putative polyketide synthase; PMID:16207901; PMID:11358695; PMID:9860992; PMID:14736915; many more matches. (2460 aa)
	CBG74925.1	Putative polyketide synthase. (2720 aa)
	CBG74835.1	Putative oxidoreductase. (320 aa)
	CBG74671.1	Zinc-binding dehydrogenase. (337 aa)
	CBG74253.1	Putative zinc-binding alcohol dehydrogenase. (361 aa)
	adhC	Alcohol dehydrogenase class III. (380 aa)
	CBG74026.1	Putative zinc-binding dehydrogenase. (329 aa)
	SCAB_6891	Putative oxidoreductase. (361 aa)
	CBG73561.1	Putative alcohol dehydrogenase (zinc-binding). (358 aa)
	SCAB_6541	Putative zinc-binding alcohol dehydrogenase. (347 aa)
	CBG73408.1	Putative oxidoreductase. (355 aa)
	CBG73398.1	Putative dehydrogenase; PMID:15313224; PMID:16506694. (346 aa)
	CBG72904.1	Putative alcohol dehydrogenase. (361 aa)
	CBG72704.1	Putative 10kD chaperone subunit; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter; Belongs to the GroES chaperonin family. (117 aa)
	CBG72202.1	Putative alchohol dehydrogenase. (346 aa)
	CBG71586.1	Putative quinone oxidoreductase. (326 aa)
	CBG71341.1	Putative zinc-binding dehydrogenase. (334 aa)
	SCAB_4191	Putative zinc-containing dehydrogenase. (355 aa)
	groS	10 kD chaperonin cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. (102 aa)
	CBG70538.1	Putative dehydrogenase. (347 aa)
	CBG70090.1	Putative alcohol dehydrogenase. (321 aa)
	CBG69453.1	Putative bi-domain oxidoreductase; PMID:12644223; PMID:12825356. (725 aa)
	SCAB_2331	Zinc-binding dehydrogenase. (347 aa)
	SCAB_2281	Putative zinc-binding alcohol dehydrogenase. (346 aa)
	SCAB_2111	Putative alcohol dehydrogenase. (333 aa)
	CBG68738.1	Putative zinc-binding oxidoreductase. (310 aa)
	CBG68736.1	Putative dehydrogenase. (326 aa)
	CBG68556.1	Putative oxidoreductase. (332 aa)
	CBG68549.1	Putative oxidoreductase. (379 aa)
	CBG68517.1	Putative glutathione-dependent aldehyde dehydrogenase. (399 aa)
	tdh	Threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate.; Belongs to the zinc-containing alcohol dehydrogenase family. (342 aa)
	CBG68239.1	Putative alcohol dehydrogenase. (340 aa)
	CBG68231.1	Putative zinc-binding alcohol dehydrogenase. (356 aa)
	CBG68214.1	Putative zinc-binding oxidoreductase. (347 aa)

Your Current Organism:

Streptomyces scabiei

NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG68214.1	CBG74925.1	SCAB_10391	SCAB_79651	Putative zinc-binding oxidoreductase.	Putative polyketide synthase.	0.400
CBG68214.1	CBG75341.1	SCAB_10391	SCAB_83911	Putative zinc-binding oxidoreductase.	Putative type I polyketide synthase.	0.400
CBG68231.1	CBG75266.1	SCAB_10591	SCAB_83131	Putative zinc-binding alcohol dehydrogenase.	Putative zinc-containing dehydrogenase.	0.926
CBG68231.1	SCAB_4191	SCAB_10591	SCAB_4191	Putative zinc-binding alcohol dehydrogenase.	Putative zinc-containing dehydrogenase.	0.900
CBG68239.1	CBG68549.1	SCAB_10681	SCAB_13971	Putative alcohol dehydrogenase.	Putative oxidoreductase.	0.409
CBG68239.1	CBG75266.1	SCAB_10681	SCAB_83131	Putative alcohol dehydrogenase.	Putative zinc-containing dehydrogenase.	0.639
CBG68239.1	SCAB_9131	SCAB_10681	SCAB_9131	Putative alcohol dehydrogenase.	Probable zinc-binding alcohol dehydrogenase.	0.402
CBG68549.1	CBG68239.1	SCAB_13971	SCAB_10681	Putative oxidoreductase.	Putative alcohol dehydrogenase.	0.409
CBG68549.1	CBG70538.1	SCAB_13971	SCAB_34421	Putative oxidoreductase.	Putative dehydrogenase.	0.458
CBG68549.1	CBG72904.1	SCAB_13971	SCAB_58841	Putative oxidoreductase.	Putative alcohol dehydrogenase.	0.434
CBG68549.1	CBG75420.1	SCAB_13971	SCAB_84731	Putative oxidoreductase.	Putative alcohol dehydrogenase.	0.405
CBG68549.1	CBG75774.1	SCAB_13971	SCAB_88381	Putative oxidoreductase.	Putative dehydrogenase.	0.783
CBG68549.1	SCAB_9581	SCAB_13971	SCAB_9581	Putative oxidoreductase.	Putative zinc-binding alcohol dehydrogenase.	0.776
CBG68556.1	CBG72904.1	SCAB_14051	SCAB_58841	Putative oxidoreductase.	Putative alcohol dehydrogenase.	0.423
CBG68556.1	CBG74026.1	SCAB_14051	SCAB_70331	Putative oxidoreductase.	Putative zinc-binding dehydrogenase.	0.749
CBG68556.1	CBG75420.1	SCAB_14051	SCAB_84731	Putative oxidoreductase.	Putative alcohol dehydrogenase.	0.426
CBG68556.1	CBG75774.1	SCAB_14051	SCAB_88381	Putative oxidoreductase.	Putative dehydrogenase.	0.765
CBG68556.1	CBG75847.1	SCAB_14051	SCAB_89121	Putative oxidoreductase.	Putative dehydrogenase.	0.759
CBG68556.1	SCAB_2331	SCAB_14051	SCAB_2331	Putative oxidoreductase.	Zinc-binding dehydrogenase.	0.715
CBG68556.1	SCAB_6541	SCAB_14051	SCAB_6541	Putative oxidoreductase.	Putative zinc-binding alcohol dehydrogenase.	0.755