(30 nodes) Luciferase-like domain superfamily network (Streptomyces scabiei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG68928.1	Putative oxidoreductase. (339 aa)
	CBG68312.1	Putative oxygenase. (349 aa)
	SCAB_1161	Putative monooxygenase. (129 aa)
	CBG68408.1	Putative monooxygenase. (448 aa)
	CBG68409.1	Putative monooxygenase. (718 aa)
	SCAB_9031	Putative hypothetical protein. (307 aa)
	CBG75833.1	Putative oxidoreductase. (329 aa)
	CBG75660.1	Putative oxidoreductase. (287 aa)
	ssuD	Alkanesulfonate monooxygenase. (383 aa)
	CBG74928.1	Conserved hypothetical protein; PMID:15574904. (276 aa)
	CBG74778.1	POSSIBLE OXIDOREDUCTASE; TTA-Leu codon(s) 11 may indicate regulation by BldA. (293 aa)
	CBG74296.1	Putative ATP/GTP-binding protein. (351 aa)
	CBG74212.1	Conserved hypothetical protein. (354 aa)
	CBG73601.1	Conserved hypothetical protein. (288 aa)
	CBG73550.1	Putative oxidoreductase. (336 aa)
	CBG72992.1	Putative monooxygenase; PMID:8892809. (448 aa)
	CBG68627.1	Putative luciferase-like monooxygenase. (380 aa)
	CBG72775.1	Putative monooxygenase. (366 aa)
	CBG72253.1	Conserved hypothetical protein; PMID:16511823. (281 aa)
	CBG72240.1	Putative monooxygenase. (365 aa)
	CBG72233.1	Putative monooxygenase. (327 aa)
	CBG71807.1	Conserved hypothetical protein. (320 aa)
	CBG71700.1	Putative monooxygenase. (300 aa)
	CBG71019.1	Putative monooxygenase. (352 aa)
	CBG70964.1	Putative oxidoreductase. (383 aa)
	SCAB_3251	Putative oxidoreductase. (384 aa)
	CBG69956.1	Putative aldehyde monooxygenase. (342 aa)
	CBG69734.1	Conserved hypothetical protein. (323 aa)
	CBG69435.1	Putative monooxygenase. (307 aa)
	CBG68874.1	Putative dehydrogenase. (320 aa)

Your Current Organism:

Streptomyces scabiei

NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG68312.1	CBG69734.1	SCAB_11441	SCAB_26301	Putative oxygenase.	Conserved hypothetical protein.	0.578
CBG68312.1	CBG72240.1	SCAB_11441	SCAB_52031	Putative oxygenase.	Putative monooxygenase.	0.571
CBG68408.1	CBG68409.1	SCAB_12461	SCAB_12471	Putative monooxygenase.	Putative monooxygenase.	0.819
CBG68408.1	CBG71019.1	SCAB_12461	SCAB_39391	Putative monooxygenase.	Putative monooxygenase.	0.488
CBG68408.1	SCAB_1161	SCAB_12461	SCAB_1161	Putative monooxygenase.	Putative monooxygenase.	0.759
CBG68408.1	ssuD	SCAB_12461	SCAB_85191	Putative monooxygenase.	Alkanesulfonate monooxygenase.	0.733
CBG68409.1	CBG68408.1	SCAB_12471	SCAB_12461	Putative monooxygenase.	Putative monooxygenase.	0.819
CBG68409.1	CBG71019.1	SCAB_12471	SCAB_39391	Putative monooxygenase.	Putative monooxygenase.	0.510
CBG68409.1	SCAB_1161	SCAB_12471	SCAB_1161	Putative monooxygenase.	Putative monooxygenase.	0.774
CBG68409.1	ssuD	SCAB_12471	SCAB_85191	Putative monooxygenase.	Alkanesulfonate monooxygenase.	0.702
CBG68627.1	CBG72233.1	SCAB_14811	SCAB_51961	Putative luciferase-like monooxygenase.	Putative monooxygenase.	0.427
CBG68627.1	CBG72253.1	SCAB_14811	SCAB_52161	Putative luciferase-like monooxygenase.	Conserved hypothetical protein; PMID:16511823.	0.639
CBG68627.1	CBG74928.1	SCAB_14811	SCAB_79681	Putative luciferase-like monooxygenase.	Conserved hypothetical protein; PMID:15574904.	0.629
CBG68874.1	CBG68928.1	SCAB_17441	SCAB_17981	Putative dehydrogenase.	Putative oxidoreductase.	0.665
CBG68874.1	CBG73550.1	SCAB_17441	SCAB_65481	Putative dehydrogenase.	Putative oxidoreductase.	0.661
CBG68874.1	CBG74778.1	SCAB_17441	SCAB_78131	Putative dehydrogenase.	POSSIBLE OXIDOREDUCTASE; TTA-Leu codon(s) 11 may indicate regulation by BldA.	0.632
CBG68874.1	SCAB_9031	SCAB_17441	SCAB_9031	Putative dehydrogenase.	Putative hypothetical protein.	0.479
CBG68928.1	CBG68874.1	SCAB_17981	SCAB_17441	Putative oxidoreductase.	Putative dehydrogenase.	0.665
CBG68928.1	CBG69435.1	SCAB_17981	SCAB_23221	Putative oxidoreductase.	Putative monooxygenase.	0.567
CBG68928.1	CBG71700.1	SCAB_17981	SCAB_46451	Putative oxidoreductase.	Putative monooxygenase.	0.673