STRINGSTRING
litS litS CBG70992.1 CBG70992.1 CBG70795.1 CBG70795.1 CBG70723.1 CBG70723.1 CBG70711.1 CBG70711.1 CBG70652.1 CBG70652.1 CBG70611.1 CBG70611.1 CBG70609.1 CBG70609.1 CBG70582.1 CBG70582.1 CBG70571.1 CBG70571.1 CBG70483.1 CBG70483.1 CBG70217.1 CBG70217.1 sigR sigR sig1 sig1 SCAB_2871 SCAB_2871 whiG whiG hrdB hrdB CBG69445.1 CBG69445.1 CBG69112.1 CBG69112.1 CBG68850.1 CBG68850.1 CBG68747.1 CBG68747.1 CBG68330.1 CBG68330.1 CBG68257.1 CBG68257.1 CBG68184.1 CBG68184.1 sigE sigE CBG71230.1 CBG71230.1 CBG71235.1 CBG71235.1 SCAB_4351 SCAB_4351 CBG71522.1 CBG71522.1 CBG71525.1 CBG71525.1 CBG71529.1 CBG71529.1 CBG71654.1 CBG71654.1 SCAB_47081 SCAB_47081 CBG71781.1 CBG71781.1 CBG71782.1 CBG71782.1 CBG71963.1 CBG71963.1 CBG72191.1 CBG72191.1 CBG72222.1 CBG72222.1 CBG72287.1 CBG72287.1 CBG72291.1 CBG72291.1 SCAB_3921 SCAB_3921 SCAB_9641 SCAB_9641 CBG75650.1 CBG75650.1 CBG75645.1 CBG75645.1 CBG75541.1 CBG75541.1 CBG75540.1 CBG75540.1 CBG75457.1 CBG75457.1 CBG75108.1 CBG75108.1 CBG75029.1 CBG75029.1 CBG74915.1 CBG74915.1 CBG74765.1 CBG74765.1 CBG74235.1 CBG74235.1 SCAB_7181 SCAB_7181 CBG74101.1 CBG74101.1 CBG74063.1 CBG74063.1 CBG74054.1 CBG74054.1 CBG74009.1 CBG74009.1 CBG73584.1 CBG73584.1 CBG73556.1 CBG73556.1 hrdA hrdA CBG73254.1 CBG73254.1 CBG72980.1 CBG72980.1 CBG72616.1 CBG72616.1 CBG72506.1 CBG72506.1 hrdD hrdD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
litSPutative sigma factor; PMID:15716454; cluster 0758 with SCAB85121; carotenoid pigment gene cluster; Belongs to the sigma-70 factor family. ECF subfamily. (207 aa)
CBG70992.1AdsA-like sigma factor; PMID:10913094; AdsA is regulated by AdpA in the A factor cascade in S. griseus; Belongs to the sigma-70 factor family. ECF subfamily. (258 aa)
CBG70795.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (198 aa)
CBG70723.1Putative sigma-like transcription regulator; Belongs to the sigma-70 factor family. (434 aa)
CBG70711.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
CBG70652.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)
CBG70611.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (232 aa)
CBG70609.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (228 aa)
CBG70582.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (334 aa)
CBG70571.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (251 aa)
CBG70483.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (238 aa)
CBG70217.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (219 aa)
sigRPutative oxidative stress sigma factor; PMID: 10428967; PMID: 9755177; Belongs to the sigma-70 factor family. ECF subfamily. (223 aa)
sig1Putative sigma factor; PMID: 10913862; PMID: 14597396; Belongs to the sigma-70 factor family. (388 aa)
SCAB_2871Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)
whiGSporulation-specific sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (258 aa)
hrdBMajor vegetative sigma factor HrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (516 aa)
CBG69445.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (166 aa)
CBG69112.1Conserved hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily. (548 aa)
CBG68850.1Putative sigma factor; Belongs to the sigma-70 factor family. (262 aa)
CBG68747.1Longer than usual sigma factor; Belongs to the sigma-70 factor family. (1033 aa)
CBG68330.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
CBG68257.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)
CBG68184.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (168 aa)
sigESigE-like sigma factor; PMID:11342219; PMID: 9004230; S1 and characterisation, PMID:11342219; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
CBG71230.1Putative sigma factor; PMID: 16085885; Belongs to the sigma-70 factor family. ECF subfamily. (213 aa)
CBG71235.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
SCAB_4351Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
CBG71522.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (178 aa)
CBG71525.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
CBG71529.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
CBG71654.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (236 aa)
SCAB_47081Conserved hypothetical protein (fragment); Pseudo missing stop codon - gene fragment; Belongs to the sigma-70 factor family. ECF subfamily. (156 aa)
CBG71781.1SigH-like stress response sigma factor; PMID:14597396; Belongs to the sigma-70 factor family. (306 aa)
CBG71782.1SigF-like sigma factor; PMID: 7476207; PMID:14597396; Belongs to the sigma-70 factor family. (287 aa)
CBG71963.1Putative regulator; Belongs to the sigma-70 factor family. ECF subfamily. (613 aa)
CBG72191.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
CBG72222.1Putative sigma factor; No close matches in S. coelicolor or S. avermitilis; Belongs to the sigma-70 factor family. ECF subfamily. (222 aa)
CBG72287.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (197 aa)
CBG72291.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (214 aa)
SCAB_3921Putative sigma factor; Belongs to the sigma-70 factor family. (314 aa)
SCAB_9641Putative sigma factor; Belongs to the sigma-70 factor family. (308 aa)
CBG75650.1Sigma factor; Many similar; Belongs to the sigma-70 factor family. (283 aa)
CBG75645.1Putative sigma factor; Belongs to the sigma-70 factor family. (385 aa)
CBG75541.1Probable sigma factor; Belongs to the sigma-70 factor family. (280 aa)
CBG75540.1Putative sigma factor; Belongs to the sigma-70 factor family. (275 aa)
CBG75457.1Putative sigma factor; Cluster 0758 with SCAB5471; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)
CBG75108.1Putative sigma factor; Belongs to the sigma-70 factor family. (315 aa)
CBG75029.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (186 aa)
CBG74915.1Conserved hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily. (246 aa)
CBG74765.1Putative sigma factor; PMID:12446651; PMID:15112993; Belongs to the sigma-70 factor family. (295 aa)
CBG74235.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)
SCAB_7181Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
CBG74101.1Putative membrane-associated DNA-binding protein; PF04545/PF08281 at Cterm: this protein may bind -35 element of Sigma-70 promoter; Belongs to the sigma-70 factor family. ECF subfamily. (220 aa)
CBG74063.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)
CBG74054.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa)
CBG74009.1Putative sigma factor; PMID:12837387; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
CBG73584.1Putative sigma factor; Belongs to the sigma-70 factor family. (208 aa)
CBG73556.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
hrdAPrincipal sigma factor HrdA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (387 aa)
CBG73254.1Conserved hypothetical protein; No full length db matches; N-term PF04542 match; Belongs to the sigma-70 factor family. ECF subfamily. (537 aa)
CBG72980.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
CBG72616.1Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
CBG72506.1SigL-like sigma factor; PMID:14597396; PMID:9115095; PMID:10071227; PMID:9826694; PMID:15292136; PMID:7770044; PMID:10517579; Belongs to the sigma-70 factor family. (304 aa)
hrdDSigma factor HrdD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (332 aa)
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.