(4 nodes) ABC-2 family transporter protein network (Streptomyces scabiei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG72315.1	Putative integral membrane protein. (271 aa)
	CBG72316.1	Putative ABC transport system, transmembrane component. (323 aa)
	CBG72707.1	Putative ABC transporter transmembrane subunit. (266 aa)
	CBG72708.1	Putative ABC transporter transmembrane subunit. (297 aa)

Your Current Organism:

Streptomyces scabiei

NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG72315.1	CBG72316.1	SCAB_52801	SCAB_52811	Putative integral membrane protein.	Putative ABC transport system, transmembrane component.	0.975
CBG72315.1	CBG72708.1	SCAB_52801	SCAB_56821	Putative integral membrane protein.	Putative ABC transporter transmembrane subunit.	0.848
CBG72316.1	CBG72315.1	SCAB_52811	SCAB_52801	Putative ABC transport system, transmembrane component.	Putative integral membrane protein.	0.975
CBG72316.1	CBG72707.1	SCAB_52811	SCAB_56811	Putative ABC transport system, transmembrane component.	Putative ABC transporter transmembrane subunit.	0.848
CBG72707.1	CBG72316.1	SCAB_56811	SCAB_52811	Putative ABC transporter transmembrane subunit.	Putative ABC transport system, transmembrane component.	0.848
CBG72707.1	CBG72708.1	SCAB_56811	SCAB_56821	Putative ABC transporter transmembrane subunit.	Putative ABC transporter transmembrane subunit.	0.975
CBG72708.1	CBG72315.1	SCAB_56821	SCAB_52801	Putative ABC transporter transmembrane subunit.	Putative integral membrane protein.	0.848
CBG72708.1	CBG72707.1	SCAB_56821	SCAB_56811	Putative ABC transporter transmembrane subunit.	Putative ABC transporter transmembrane subunit.	0.975