STRINGSTRING
tomA tomA CBG70726.1 CBG70726.1 CBG70792.1 CBG70792.1 SCAB_6021 SCAB_6021 xlnA xlnA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tomAPutative tomatinase; PMID: 15686551; PMID:16255248; PMID:9251186; pathogenicity. (533 aa)
CBG70726.1Putative xylanase/cellulase; PMID: 12876348; PMID: 9251186. (459 aa)
CBG70792.1Putative secreted cellulase/xylanase. (373 aa)
SCAB_6021Putative glycosyl hydrolase. (354 aa)
xlnAXylanase A. (485 aa)
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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