STRINGSTRING
SCAB_0901 SCAB_0901 amiA2 amiA2 CBG68336.1 CBG68336.1 fadB1 fadB1 fadA4 fadA4 SCAB_14161 SCAB_14161 aofH aofH CBG68659.1 CBG68659.1 nbaC nbaC amnE amnE amnC amnC kynU kynU CBG68669.1 CBG68669.1 CBG68670.1 CBG68670.1 katE katE CBG69283.1 CBG69283.1 fadA fadA CBG70567.1 CBG70567.1 CBG70860.1 CBG70860.1 SCAB_3781 SCAB_3781 CBG71072.1 CBG71072.1 kynU-2 kynU-2 kynA kynA echA12 echA12 fadA2 fadA2 SCAB_5931 SCAB_5931 CBG73534.1 CBG73534.1 CBG73542.1 CBG73542.1 CBG73704.1 CBG73704.1 CBG73705.1 CBG73705.1 CBG73865.1 CBG73865.1 echA13 echA13 CBG74208.1 CBG74208.1 CBG74252.1 CBG74252.1 echA9 echA9 CBG75071.1 CBG75071.1 echA19 echA19 ltp3 ltp3 CBG75989.1 CBG75989.1 cpeB cpeB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SCAB_0901Putative transposase fragment; Pseudo: short fragment. (676 aa)
amiA2PROBABLE AMIDASE AMIA2 (AMINOHYDROLASE); Belongs to the amidase family. (477 aa)
CBG68336.1Putative PROBABLE AMIDASE AMIB2 (AMINOHYDROLASE). (449 aa)
fadB1Putative fatty acid oxidative multifunctional enzyme. (724 aa)
fadA4Putative thiolase/acety-coA transferase; Belongs to the thiolase-like superfamily. Thiolase family. (404 aa)
SCAB_14161Putative insertion element protein (fragment); PMID:1700062; from fasta search looks like fragment; Belongs to the amidase family. (447 aa)
aofHPROBABLE FLAVIN-CONTAINING MONOAMINE OXIDASE AOFH (AMINE OXIDASE) (MAO). (471 aa)
CBG68659.1Conserved hypothetical protein. (338 aa)
nbaCPutative 3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate; Belongs to the 3-HAO family. (173 aa)
amnE2-aminomuconate deaminase. (140 aa)
amnC2-aminomuconic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (491 aa)
kynUConserved hypothetical protein; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (429 aa)
CBG68669.1Putative esterase. (292 aa)
CBG68670.1Putative dioxygenanse; PMID:1937018; nearest matches eukaryotic proteins. (375 aa)
katECatalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide. (697 aa)
CBG69283.1Putative amidase (aminohydrolase); PMID: 10931852. (476 aa)
fadAPutative acetyl-coA C-acetyltransferase FadA; PMID:11518326; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
CBG70567.1Putative aldehyde dehydrogenase. (478 aa)
CBG70860.1Putative amidase. (401 aa)
SCAB_3781Putative amidase; Belongs to the amidase family. (476 aa)
CBG71072.1Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (486 aa)
kynU-2Putative aminotransferase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (399 aa)
kynAPutative tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. (281 aa)
echA12Putative enoyl-CoA hydratase. (248 aa)
fadA2Putative acetyl-CoA C-acyltransferase; PMID:12101301; Belongs to the thiolase-like superfamily. Thiolase family. (406 aa)
SCAB_5931Putative P450-like protein. (1070 aa)
CBG73534.1Putative acetyl-coA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (389 aa)
CBG73542.1Putative oxidoreductase; Belongs to the aldehyde dehydrogenase family. (497 aa)
CBG73704.1Putative dihydrolipoyllysine-residue succinyltransferase; PMID:8504804; pair of direct repeats and Pro/Ala tract (entirely G/C). (601 aa)
CBG73705.1Putative dihydrolipoamide dehydrogenase; PMID:9858775. (462 aa)
CBG73865.1Putative thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (385 aa)
echA13Putative enoyl-CoA hydratase. (263 aa)
CBG74208.1Putative acyl-CoA dehydrogenase. (396 aa)
CBG74252.1Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (456 aa)
echA9POSSIBLE ENOYL-COA HYDRATASE ECHA9 (ENOYL HYDRASE) (UNSATURATED ACYL-COA HYDRATASE) (CROTONASE). (350 aa)
CBG75071.1Putative aldehyde dehydrogenase. (486 aa)
echA19POSSIBLE ENOYL-COA HYDRATASE ECHA19 (ENOYL HYDRASE) (UNSATURATED ACYL-COA HYDRATASE) (CROTONASE). (266 aa)
ltp3PROBABLE LIPID CARRIER PROTEIN OR KETO ACYL-COA THIOLASE LTP3. (388 aa)
CBG75989.1Conserved hypothetical protein. (342 aa)
cpeBCatalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (737 aa)
Your Current Organism:
Streptomyces scabiei
NCBI taxonomy Id: 680198
Other names: S. scabiei 87.22, Streptomyces scabiei 87.22, Streptomyces scabiei str. 87.22, Streptomyces scabiei strain 87.22
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