(12 nodes) Mixed, incl. ABC transporter, permease protein, BtuC-like, and Periplasmic binding protein network (Streptomyces pactum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOW85205.1	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	AOW85206.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AOW85207.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	BC342_28710	Non-ribosomal peptide synthetase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	AOW89850.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	AOW89851.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	BC342_33160	ABC transporter substrate-binding protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (360 aa)
	AOW90574.1	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AOW90666.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (353 aa)
	AOW90667.1	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (344 aa)
	AOW90668.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AOW90669.1	Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)

Your Current Organism:

Streptomyces pactum

NCBI taxonomy Id: 68249
Other names: ATCC 27456, BCRC 12076, CBS 461.69, CBS 734.72, CCRC 12076, CCRC:12076, DSM 40530, IFO 13433, IMET 43357, ISP 5530, JCM 4288, JCM 4809, KCTC 9165, LMG 19357, LMG:19357, NBRC 13433, NCIMB 9445, NRRL 2939, NRRL ISP-5530, NRRL-ISP 5530, S. pactum, Streptomyces pactum var. pactum, Streptomyces pactus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOW85205.1	AOW85206.1	BC342_00285	BC342_00290	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AOW85205.1	AOW85207.1	BC342_00285	BC342_00295	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AOW85205.1	AOW89850.1	BC342_00285	BC342_28715	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
AOW85205.1	AOW89851.1	BC342_00285	BC342_28720	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
AOW85205.1	AOW90574.1	BC342_00285	BC342_33165	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AOW85205.1	AOW90666.1	BC342_00285	BC342_33725	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.726
AOW85205.1	AOW90668.1	BC342_00285	BC342_33735	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
AOW85205.1	BC342_33160	BC342_00285	BC342_33160	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.872
AOW85206.1	AOW85205.1	BC342_00290	BC342_00285	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AOW85206.1	AOW85207.1	BC342_00290	BC342_00295	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AOW85206.1	AOW89850.1	BC342_00290	BC342_28715	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
AOW85206.1	AOW90666.1	BC342_00290	BC342_33725	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.920
AOW85206.1	AOW90667.1	BC342_00290	BC342_33730	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.802
AOW85206.1	AOW90669.1	BC342_00290	BC342_33740	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
AOW85206.1	BC342_28710	BC342_00290	BC342_28710	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
AOW85206.1	BC342_33160	BC342_00290	BC342_33160	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.941
AOW85207.1	AOW85205.1	BC342_00295	BC342_00285	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AOW85207.1	AOW85206.1	BC342_00295	BC342_00290	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AOW85207.1	AOW89851.1	BC342_00295	BC342_28720	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AOW85207.1	AOW90574.1	BC342_00295	BC342_33165	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939

page 1 of 6

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About