STRINGSTRING
A4R28_27365 A4R28_27365 rph rph A4R28_18140 A4R28_18140 A4R28_29905 A4R28_29905 A4R28_23730 A4R28_23730 GCA_000474725_01831 GCA_000474725_01831 A4R28_15765 A4R28_15765 A4R28_15760 A4R28_15760 A4R28_08250 A4R28_08250 A4R28_06790 A4R28_06790 A4R28_06785 A4R28_06785 rnr rnr A4R28_08955 A4R28_08955 rne rne A4R28_08750 A4R28_08750 A4R28_21390 A4R28_21390 pnp pnp
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A4R28_27365Unannotated protein. (859 aa)
rphUnannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (238 aa)
A4R28_18140Unannotated protein. (206 aa)
A4R28_29905Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (429 aa)
A4R28_23730Unannotated protein; Belongs to the DEAD box helicase family. (431 aa)
GCA_000474725_01831Unannotated protein. (194 aa)
A4R28_15765Unannotated protein. (70 aa)
A4R28_15760Unannotated protein. (70 aa)
A4R28_08250Unannotated protein. (467 aa)
A4R28_06790Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (170 aa)
A4R28_06785Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (196 aa)
rnrUnannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (767 aa)
A4R28_08955Unannotated protein. (198 aa)
rneUnannotated protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (988 aa)
A4R28_08750Unannotated protein; Belongs to the DEAD box helicase family. (548 aa)
A4R28_21390Unannotated protein. (168 aa)
pnpUnannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (768 aa)
Your Current Organism:
Mesorhizobium ciceri ca181
NCBI taxonomy Id: 682633
Other names: M. ciceri ca181, Mesorhizobium ciceri str. ca181, Mesorhizobium ciceri strain ca181
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