STRINGSTRING
rpmI rpmI GCA_000474725_06879 GCA_000474725_06879 A4R28_28015 A4R28_28015 A4R28_28105 A4R28_28105 recR recR rpsO rpsO rpsT rpsT GCA_000474725_06648 GCA_000474725_06648 A4R28_22245 A4R28_22245 A4R28_22075 A4R28_22075 A4R28_21950 A4R28_21950 queE queE nifH nifH GCA_000474725_06418 GCA_000474725_06418 GCA_000474725_06329 GCA_000474725_06329 GCA_000474725_06240 GCA_000474725_06240 smc smc GCA_000474725_05880 GCA_000474725_05880 GCA_000474725_05874 GCA_000474725_05874 GCA_000474725_05847 GCA_000474725_05847 ispE ispE A4R28_01490 A4R28_01490 GCA_000474725_05729 GCA_000474725_05729 GCA_000474725_05679 GCA_000474725_05679 GCA_000474725_05671 GCA_000474725_05671 GCA_000474725_05576 GCA_000474725_05576 GCA_000474725_05515 GCA_000474725_05515 A4R28_20815 A4R28_20815 A4R28_30755 A4R28_30755 GCA_000474725_05317 GCA_000474725_05317 GCA_000474725_05258 GCA_000474725_05258 GCA_000474725_05257 GCA_000474725_05257 GCA_000474725_05256 GCA_000474725_05256 GCA_000474725_05237 GCA_000474725_05237 betI betI A4R28_02555 A4R28_02555 A4R28_02780 A4R28_02780 A4R28_02850 A4R28_02850 recO recO A4R28_03080 A4R28_03080 GCA_000474725_05087 GCA_000474725_05087 GCA_000474725_05084 GCA_000474725_05084 A4R28_03100 A4R28_03100 GCA_000474725_02743 GCA_000474725_02743 GCA_000474725_02841 GCA_000474725_02841 GCA_000474725_02851 GCA_000474725_02851 A4R28_13205 A4R28_13205 A4R28_19235 A4R28_19235 GCA_000474725_02988 GCA_000474725_02988 A4R28_02205 A4R28_02205 GCA_000474725_03040 GCA_000474725_03040 miaA miaA A4R28_10725 A4R28_10725 A4R28_10975 A4R28_10975 A4R28_12175 A4R28_12175 A4R28_12375 A4R28_12375 A4R28_12710 A4R28_12710 A4R28_03455 A4R28_03455 GCA_000474725_03502 GCA_000474725_03502 A4R28_10310 A4R28_10310 A4R28_10470 A4R28_10470 rplK rplK rplA rplA rplJ rplJ rplL rplL rpsL rpsL rpsG rpsG rpsJ rpsJ rplC rplC rplB rplB rpsS rpsS rplV rplV rpsC rpsC rplP rplP rpmC rpmC rpsQ rpsQ rplN rplN rplX rplX rplE rplE rpsN rpsN rpsH rpsH rplF rplF rplR rplR rpsE rpsE rpmD rpmD rplO rplO rpsM rpsM rpsK rpsK rplQ rplQ A4R28_08325 A4R28_08325 A4R28_08295 A4R28_08295 GCA_000474725_03633 GCA_000474725_03633 pdhA pdhA GCA_000474725_03721 GCA_000474725_03721 A4R28_07470 A4R28_07470 GCA_000474725_03882 GCA_000474725_03882 rpsB rpsB clpS-2 clpS-2 gyrA gyrA A4R28_06570 A4R28_06570 A4R28_06450 A4R28_06450 A4R28_06415 A4R28_06415 GCA_000474725_04122 GCA_000474725_04122 topA topA rpmG rpmG GCA_000474725_05057 GCA_000474725_05057 parE parE rpsI rpsI rplM rplM A4R28_04925 A4R28_04925 GCA_000474725_04490 GCA_000474725_04490 A4R28_05105 A4R28_05105 A4R28_05150 A4R28_05150 rpsD rpsD A4R28_16520 A4R28_16520 A4R28_05490 A4R28_05490 A4R28_08765 A4R28_08765 A4R28_08695 A4R28_08695 parC parC GCA_000474725_04768 GCA_000474725_04768 A4R28_14095 A4R28_14095 A4R28_04090 A4R28_04090 A4R28_03940 A4R28_03940 A4R28_03875 A4R28_03875 A4R28_03380 A4R28_03380 rpsF rpsF rpsR rpsR rplI rplI A4R28_03270 A4R28_03270 A4R28_03265 A4R28_03265 A4R28_02630 A4R28_02630 GCA_000474725_02650 GCA_000474725_02650 GCA_000474725_02663 GCA_000474725_02663 GCA_000474725_02682 GCA_000474725_02682 GCA_000474725_02683 GCA_000474725_02683 GCA_000474725_02728 GCA_000474725_02728 GCA_000474725_02734 GCA_000474725_02734 A4R28_25680 A4R28_25680 A4R28_25465 A4R28_25465 A4R28_25390 A4R28_25390 A4R28_25245 A4R28_25245 GCA_000474725_00121 GCA_000474725_00121 rplT rplT A4R28_26180 A4R28_26180 A4R28_26505 A4R28_26505 gyrB gyrB A4R28_26785 A4R28_26785 A4R28_26805 A4R28_26805 A4R28_27365 A4R28_27365 A4R28_27505 A4R28_27505 A4R28_24855 A4R28_24855 A4R28_14380 A4R28_14380 A4R28_24430 A4R28_24430 A4R28_24000 A4R28_24000 A4R28_24020 A4R28_24020 A4R28_17550 A4R28_17550 A4R28_17605 A4R28_17605 rpsU rpsU hpf hpf ihfB ihfB GCA_000474725_00871 GCA_000474725_00871 GCA_000474725_01086 GCA_000474725_01086 A4R28_18745 A4R28_18745 A4R28_18825 A4R28_18825 A4R28_18845 A4R28_18845 A4R28_19080 A4R28_19080 rpmB rpmB A4R28_19410 A4R28_19410 rpmF rpmF rpmJ rpmJ A4R28_19995 A4R28_19995 GCA_000474725_01415 GCA_000474725_01415 GCA_000474725_01422 GCA_000474725_01422 rpmE rpmE A4R28_20365 A4R28_20365 nadD nadD rpmA rpmA rplU rplU A4R28_22460 A4R28_22460 priA priA A4R28_22720 A4R28_22720 GCA_000474725_02583 GCA_000474725_02583 A4R28_24450 A4R28_24450 A4R28_23010 A4R28_23010 A4R28_23020 A4R28_23020 GCA_000474725_01716 GCA_000474725_01716 A4R28_23195 A4R28_23195 rplS rplS rimM rimM A4R28_23610 A4R28_23610 rpsP rpsP GCA_000474725_01873 GCA_000474725_01873 A4R28_17195 A4R28_17195 A4R28_16740 A4R28_16740 clpS clpS rplY rplY A4R28_15835 A4R28_15835 dnaG dnaG A4R28_15010 A4R28_15010 GCA_000474725_02322 GCA_000474725_02322 GCA_000474725_02383 GCA_000474725_02383 A4R28_05640 A4R28_05640 GCA_000474725_02417 GCA_000474725_02417 A4R28_25560 A4R28_25560 A4R28_05775 A4R28_05775 A4R28_07890 A4R28_07890 GCA_000474725_02519 GCA_000474725_02519 GCA_000474725_02523 GCA_000474725_02523 GCA_000474725_02533 GCA_000474725_02533
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpmIUnannotated protein; Belongs to the bacterial ribosomal protein bL35 family. (67 aa)
GCA_000474725_06879Unannotated protein. (139 aa)
A4R28_28015Unannotated protein. (351 aa)
A4R28_28105Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (107 aa)
recRUnannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (160 aa)
rpsOUnannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
rpsTUnannotated protein; Binds directly to 16S ribosomal RNA. (88 aa)
GCA_000474725_06648Unannotated protein. (157 aa)
A4R28_22245Unannotated protein. (259 aa)
A4R28_22075Unannotated protein; Could be a 3Fe-4S cluster-containing protein. (99 aa)
A4R28_21950Unannotated protein. (118 aa)
queEUnannotated protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. (244 aa)
nifHUnannotated protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (297 aa)
GCA_000474725_06418Unannotated protein. (114 aa)
GCA_000474725_06329Unannotated protein. (145 aa)
GCA_000474725_06240Unannotated protein. (138 aa)
smcUnannotated protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1153 aa)
GCA_000474725_05880Unannotated protein. (133 aa)
GCA_000474725_05874Unannotated protein. (214 aa)
GCA_000474725_05847Unannotated protein. (201 aa)
ispEUnannotated protein; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (300 aa)
A4R28_01490Unannotated protein. (196 aa)
GCA_000474725_05729Unannotated protein. (201 aa)
GCA_000474725_05679Unannotated protein. (479 aa)
GCA_000474725_05671Unannotated protein. (332 aa)
GCA_000474725_05576Unannotated protein. (222 aa)
GCA_000474725_05515Unannotated protein. (215 aa)
A4R28_20815Unannotated protein. (310 aa)
A4R28_30755Unannotated protein. (158 aa)
GCA_000474725_05317Unannotated protein. (190 aa)
GCA_000474725_05258Unannotated protein. (74 aa)
GCA_000474725_05257Unannotated protein. (119 aa)
GCA_000474725_05256Unannotated protein. (130 aa)
GCA_000474725_05237Unannotated protein. (319 aa)
betIUnannotated protein; Repressor involved in choline regulation of the bet genes. (196 aa)
A4R28_02555Unannotated protein. (127 aa)
A4R28_02780Unannotated protein; Accepts electrons from ETF and reduces ubiquinone. (559 aa)
A4R28_02850Unannotated protein. (217 aa)
recOUnannotated protein; Involved in DNA repair and RecF pathway recombination. (249 aa)
A4R28_03080Unannotated protein; Belongs to the SOS response-associated peptidase family. (166 aa)
GCA_000474725_05087Unannotated protein. (80 aa)
GCA_000474725_05084Unannotated protein. (136 aa)
A4R28_03100Unannotated protein. (158 aa)
GCA_000474725_02743Unannotated protein. (337 aa)
GCA_000474725_02841Unannotated protein. (497 aa)
GCA_000474725_02851Unannotated protein. (137 aa)
A4R28_13205Unannotated protein. (210 aa)
A4R28_19235Unannotated protein. (117 aa)
GCA_000474725_02988Unannotated protein. (154 aa)
A4R28_02205Unannotated protein; Belongs to the SOS response-associated peptidase family. (237 aa)
GCA_000474725_03040Unannotated protein. (142 aa)
miaAUnannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (215 aa)
A4R28_10725Unannotated protein. (229 aa)
A4R28_10975Unannotated protein; May be involved in recombinational repair of damaged DNA. (556 aa)
A4R28_12175Unannotated protein. (209 aa)
A4R28_12375Unannotated protein. (182 aa)
A4R28_12710Unannotated protein. (344 aa)
A4R28_03455Unannotated protein. (210 aa)
GCA_000474725_03502Unannotated protein. (229 aa)
A4R28_10310Unannotated protein. (358 aa)
A4R28_10470Unannotated protein. (219 aa)
rplKUnannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa)
rplAUnannotated protein; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (232 aa)
rplJUnannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (172 aa)
rplLUnannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (125 aa)
rpsLUnannotated protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (123 aa)
rpsGUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
rpsJUnannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
rplCUnannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (248 aa)
rplBUnannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (588 aa)
rpsSUnannotated protein; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
rplVUnannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (129 aa)
rpsCUnannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (241 aa)
rplPUnannotated protein; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (137 aa)
rpmCUnannotated protein; Belongs to the universal ribosomal protein uL29 family. (66 aa)
rpsQUnannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (79 aa)
rplNUnannotated protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rplXUnannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (104 aa)
rplEUnannotated protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (192 aa)
rpsNUnannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa)
rpsHUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa)
rplFUnannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa)
rplRUnannotated protein; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (119 aa)
rpsEUnannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (187 aa)
rpmDUnannotated protein. (65 aa)
rplOUnannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (157 aa)
rpsMUnannotated protein; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (70 aa)
rpsKUnannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (65 aa)
rplQUnannotated protein. (143 aa)
A4R28_08325Unannotated protein. (436 aa)
A4R28_08295Unannotated protein. (263 aa)
GCA_000474725_03633Unannotated protein. (889 aa)
pdhAUnannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (348 aa)
GCA_000474725_03721Unannotated protein. (219 aa)
A4R28_07470Unannotated protein. (204 aa)
GCA_000474725_03882Unannotated protein. (118 aa)
rpsBUnannotated protein; Belongs to the universal ribosomal protein uS2 family. (279 aa)
clpS-2Unannotated protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (134 aa)
gyrAUnannotated protein; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (936 aa)
A4R28_06570Unannotated protein. (182 aa)
A4R28_06450Unannotated protein. (137 aa)
A4R28_06415Unannotated protein. (139 aa)
GCA_000474725_04122Unannotated protein. (124 aa)
topAUnannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (875 aa)
rpmGUnannotated protein; Belongs to the bacterial ribosomal protein bL33 family. (55 aa)
GCA_000474725_05057Unannotated protein. (115 aa)
parEUnannotated protein; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (683 aa)
rpsIUnannotated protein; Belongs to the universal ribosomal protein uS9 family. (160 aa)
rplMUnannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (154 aa)
A4R28_04925Unannotated protein. (116 aa)
GCA_000474725_04490Unannotated protein. (390 aa)
A4R28_05105Unannotated protein. (222 aa)
A4R28_05150Unannotated protein. (165 aa)
rpsDUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (205 aa)
A4R28_16520Unannotated protein. (392 aa)
A4R28_05490Unannotated protein. (137 aa)
A4R28_08765Unannotated protein. (122 aa)
A4R28_08695Unannotated protein. (204 aa)
parCUnannotated protein; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (750 aa)
GCA_000474725_04768Unannotated protein. (164 aa)
A4R28_14095Unannotated protein. (684 aa)
A4R28_04090Unannotated protein; Belongs to the ribF family. (327 aa)
A4R28_03940Unannotated protein. (199 aa)
A4R28_03875Unannotated protein. (253 aa)
A4R28_03380Unannotated protein. (149 aa)
rpsFUnannotated protein; Binds together with S18 to 16S ribosomal RNA. (164 aa)
rpsRUnannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (82 aa)
rplIUnannotated protein; Binds to the 23S rRNA. (159 aa)
A4R28_03270Unannotated protein. (320 aa)
A4R28_03265Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (397 aa)
A4R28_02630Unannotated protein. (337 aa)
GCA_000474725_02650Unannotated protein. (182 aa)
GCA_000474725_02663Unannotated protein. (89 aa)
GCA_000474725_02682Unannotated protein. (168 aa)
GCA_000474725_02683Unannotated protein. (196 aa)
GCA_000474725_02728Unannotated protein. (344 aa)
GCA_000474725_02734Unannotated protein. (1446 aa)
A4R28_25680Unannotated protein. (255 aa)
A4R28_25465Unannotated protein. (513 aa)
A4R28_25390Unannotated protein. (134 aa)
A4R28_25245Unannotated protein. (237 aa)
GCA_000474725_00121Unannotated protein. (130 aa)
rplTUnannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (133 aa)
A4R28_26180Unannotated protein. (141 aa)
A4R28_26505Unannotated protein. (477 aa)
gyrBUnannotated protein; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (823 aa)
A4R28_26785Unannotated protein. (315 aa)
A4R28_26805Unannotated protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (565 aa)
A4R28_27365Unannotated protein. (859 aa)
A4R28_27505Unannotated protein. (267 aa)
A4R28_24855Unannotated protein. (337 aa)
A4R28_14380Unannotated protein. (117 aa)
A4R28_24430Unannotated protein. (244 aa)
A4R28_24000Unannotated protein. (410 aa)
A4R28_24020Unannotated protein; Belongs to the ParB family. (294 aa)
A4R28_17550Unannotated protein. (214 aa)
A4R28_17605Unannotated protein. (128 aa)
rpsUUnannotated protein; Belongs to the bacterial ribosomal protein bS21 family. (90 aa)
hpfUnannotated protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (185 aa)
ihfBUnannotated protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (94 aa)
GCA_000474725_00871Unannotated protein. (115 aa)
GCA_000474725_01086Unannotated protein. (537 aa)
A4R28_18745Unannotated protein. (220 aa)
A4R28_18825Unannotated protein; Belongs to the Cob(I)alamin adenosyltransferase family. (193 aa)
A4R28_18845Unannotated protein. (292 aa)
A4R28_19080Unannotated protein. (142 aa)
rpmBUnannotated protein; Belongs to the bacterial ribosomal protein bL28 family. (98 aa)
A4R28_19410Unannotated protein. (174 aa)
rpmFUnannotated protein; Belongs to the bacterial ribosomal protein bL32 family. (60 aa)
rpmJUnannotated protein; Belongs to the bacterial ribosomal protein bL36 family. (41 aa)
A4R28_19995Unannotated protein. (198 aa)
GCA_000474725_01415Unannotated protein. (229 aa)
GCA_000474725_01422Unannotated protein. (194 aa)
rpmEUnannotated protein; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (73 aa)
A4R28_20365Unannotated protein. (213 aa)
nadDUnannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (271 aa)
rpmAUnannotated protein; Belongs to the bacterial ribosomal protein bL27 family. (89 aa)
rplUUnannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (228 aa)
A4R28_22460Unannotated protein. (385 aa)
priAUnannotated protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (727 aa)
A4R28_22720Unannotated protein. (201 aa)
GCA_000474725_02583Unannotated protein. (133 aa)
A4R28_24450Unannotated protein; Belongs to the DNA glycosylase MPG family. (206 aa)
A4R28_23010Unannotated protein. (116 aa)
A4R28_23020Unannotated protein. (114 aa)
GCA_000474725_01716Unannotated protein. (200 aa)
A4R28_23195Unannotated protein. (141 aa)
rplSUnannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (179 aa)
rimMUnannotated protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (199 aa)
A4R28_23610Unannotated protein. (98 aa)
rpsPUnannotated protein; Belongs to the bacterial ribosomal protein bS16 family. (133 aa)
GCA_000474725_01873Unannotated protein. (863 aa)
A4R28_17195Unannotated protein. (267 aa)
A4R28_16740Unannotated protein. (369 aa)
clpSUnannotated protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (123 aa)
rplYUnannotated protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (213 aa)
A4R28_15835Unannotated protein. (362 aa)
dnaGUnannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (666 aa)
A4R28_15010Unannotated protein. (113 aa)
GCA_000474725_02322Unannotated protein. (457 aa)
GCA_000474725_02383Unannotated protein. (138 aa)
A4R28_05640Unannotated protein. (144 aa)
GCA_000474725_02417Unannotated protein. (204 aa)
A4R28_25560Unannotated protein. (192 aa)
A4R28_05775Unannotated protein. (130 aa)
A4R28_07890Unannotated protein. (629 aa)
GCA_000474725_02519Unannotated protein. (174 aa)
GCA_000474725_02523Unannotated protein. (221 aa)
GCA_000474725_02533Unannotated protein. (245 aa)
Your Current Organism:
Mesorhizobium ciceri ca181
NCBI taxonomy Id: 682633
Other names: M. ciceri ca181, Mesorhizobium ciceri str. ca181, Mesorhizobium ciceri strain ca181
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