(32 nodes) Mostly uncharacterized, incl. Protein of unknown function DUF4193, and Transcription factor WhiB network (Arthrobacter nitrophenolicus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

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Your Input:
	ELT46125.1	Permease; COG0628 Predicted permease. (442 aa)
	whiB	Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (177 aa)
	ELT46152.1	Hypothetical protein. (113 aa)
	ELT46159.1	COG1928 Dolichyl-phosphate-mannose--protein O-mannosyl transferase. (583 aa)
	whiB-2	WhiB family transcription factor; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (82 aa)
	ELT45321.1	Hypothetical protein; COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives. (186 aa)
	ELT45035.1	COG1329 Transcriptional regulators, similar to M. xanthus CarD. (160 aa)
	ELT44911.1	Hypothetical protein; COG0443 Molecular chaperone. (533 aa)
	yvcK	Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. (339 aa)
	whiA	Putative sporulation transcription regulator whiA; Involved in cell division and chromosome segregation. (326 aa)
	ELT44639.1	Hypothetical protein. (483 aa)
	ELT44623.1	Hypothetical protein. (99 aa)
	ELT44325.1	Hypothetical protein. (237 aa)
	ELT44326.1	Hypothetical protein. (118 aa)
	ELT44327.1	Hypothetical protein. (227 aa)
	ELT44341.1	Hypothetical protein. (216 aa)
	ELT44164.1	Hypothetical protein. (734 aa)
	ELT43724.1	Hypothetical protein. (100 aa)
	ELT43695.1	Hypothetical protein; COG0789 Predicted transcriptional regulators. (197 aa)
	sigA	RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (226 aa)
	ELT43351.1	COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32). (233 aa)
	ELT43274.1	Hypothetical protein. (150 aa)
	ELT43190.1	Hypothetical protein. (250 aa)
	ELT43161.1	Hypothetical protein. (100 aa)
	ELT43118.1	Hypothetical protein. (125 aa)
	ELT43038.1	AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (300 aa)
	ELT43002.1	Hypothetical protein. (108 aa)
	ELT43007.1	Hypothetical protein; COG1160 Predicted GTPases. (167 aa)
	rbpA-2	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. (107 aa)
	ELT42752.1	Integral membrane protein. (172 aa)
	crgA	Hypothetical protein; Involved in cell division; Belongs to the CrgA family. (83 aa)
	ELT42626.1	Carboxyvinyl-carboxyphosphonate phosphorylmutase; COG2513 PEP phosphonomutase and related enzymes. (280 aa)

Your Current Organism:

Arthrobacter nitrophenolicus

NCBI taxonomy Id: 683150
Other names: A. nitrophenolicus, Arthrobacter sp. SJCon, DSM 23165, MTCC 10104, strain SJCon

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELT42626.1	ELT44639.1	G205_23267	G205_10248	Carboxyvinyl-carboxyphosphonate phosphorylmutase; COG2513 PEP phosphonomutase and related enzymes.	Hypothetical protein.	0.751
ELT42752.1	ELT43007.1	G205_22481	G205_21089	Integral membrane protein.	Hypothetical protein; COG1160 Predicted GTPases.	0.486
ELT42752.1	ELT43161.1	G205_22481	G205_20193	Integral membrane protein.	Hypothetical protein.	0.449
ELT42752.1	ELT43190.1	G205_22481	G205_19823	Integral membrane protein.	Hypothetical protein.	0.552
ELT42752.1	ELT43274.1	G205_22481	G205_19321	Integral membrane protein.	Hypothetical protein.	0.462
ELT42752.1	ELT43351.1	G205_22481	G205_18879	Integral membrane protein.	COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32).	0.400
ELT42752.1	ELT43695.1	G205_22481	G205_16614	Integral membrane protein.	Hypothetical protein; COG0789 Predicted transcriptional regulators.	0.439
ELT42752.1	ELT43724.1	G205_22481	G205_16397	Integral membrane protein.	Hypothetical protein.	0.541
ELT42752.1	ELT44623.1	G205_22481	G205_10922	Integral membrane protein.	Hypothetical protein.	0.515
ELT42752.1	ELT44639.1	G205_22481	G205_10248	Integral membrane protein.	Hypothetical protein.	0.498
ELT42752.1	ELT45321.1	G205_22481	G205_06493	Integral membrane protein.	Hypothetical protein; COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.	0.510
ELT42752.1	rbpA-2	G205_22481	G205_21906	Integral membrane protein.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.625
ELT42752.1	whiB	G205_22481	G205_00240	Integral membrane protein.	Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.522
ELT42752.1	whiB-2	G205_22481	G205_04566	Integral membrane protein.	WhiB family transcription factor; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.638
ELT43002.1	ELT43118.1	G205_21064	G205_20477	Hypothetical protein.	Hypothetical protein.	0.490
ELT43002.1	ELT43161.1	G205_21064	G205_20193	Hypothetical protein.	Hypothetical protein.	0.570
ELT43002.1	ELT43695.1	G205_21064	G205_16614	Hypothetical protein.	Hypothetical protein; COG0789 Predicted transcriptional regulators.	0.688
ELT43002.1	ELT43724.1	G205_21064	G205_16397	Hypothetical protein.	Hypothetical protein.	0.517
ELT43002.1	ELT44623.1	G205_21064	G205_10922	Hypothetical protein.	Hypothetical protein.	0.598
ELT43002.1	ELT44639.1	G205_21064	G205_10248	Hypothetical protein.	Hypothetical protein.	0.530