18 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_00361	Uncharacterized protein. (413 aa)
	TCAL_02765	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (514 aa)
	TCAL_05174	Uncharacterized protein. (1503 aa)
	TCAL_06840	CN hydrolase domain-containing protein. (385 aa)
	TCAL_05074	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (704 aa)
	TCAL_04840	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (613 aa)
	TCAL_05307	Aldedh domain-containing protein. (524 aa)
	TCAL_03960	Uncharacterized protein; Belongs to the aldehyde dehydrogenase family. (819 aa)
	TCAL_00923	Acetyl-coenzyme A synthetase. (695 aa)
	TCAL_14635	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (328 aa)
	TCAL_05040	Uncharacterized protein. (714 aa)
	TCAL_01296	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (530 aa)
	TCAL_11399	PX domain-containing protein; Belongs to the aldehyde dehydrogenase family. (544 aa)
	TCAL_10366	Uncharacterized protein. (379 aa)
	TCAL_12822	Acetyl-coenzyme A synthetase. (676 aa)
	TCAL_07357	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (339 aa)
	TCAL_11732	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (497 aa)
	TCAL_11733	Uncharacterized protein. (519 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00361	TCAL_00923	A0A553NBU9	A0A553P5V6	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.923
TCAL_00361	TCAL_01296	A0A553NBU9	A0A553PDN4	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.817
TCAL_00361	TCAL_02765	A0A553NBU9	A0A553NQH1	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.943
TCAL_00361	TCAL_03960	A0A553NBU9	A0A553P409	Uncharacterized protein.	Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.	0.743
TCAL_00361	TCAL_04840	A0A553NBU9	A0A553NZH5	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.925
TCAL_00361	TCAL_05040	A0A553NBU9	A0A553P8P1	Uncharacterized protein.	Uncharacterized protein.	0.945
TCAL_00361	TCAL_05074	A0A553NBU9	A0A553NTV6	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.556
TCAL_00361	TCAL_05174	A0A553NBU9	A0A553NR78	Uncharacterized protein.	Uncharacterized protein.	0.583
TCAL_00361	TCAL_05307	A0A553NBU9	A0A553P2A5	Uncharacterized protein.	Aldedh domain-containing protein.	0.971
TCAL_00361	TCAL_07357	A0A553NBU9	A0A553PNH0	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.817
TCAL_00361	TCAL_10366	A0A553NBU9	A0A553PHX5	Uncharacterized protein.	Uncharacterized protein.	0.944
TCAL_00361	TCAL_11399	A0A553NBU9	A0A553PFT3	Uncharacterized protein.	PX domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.940
TCAL_00361	TCAL_11732	A0A553NBU9	A0A553PPI0	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.878
TCAL_00361	TCAL_11733	A0A553NBU9	A0A553PPJ0	Uncharacterized protein.	Uncharacterized protein.	0.952
TCAL_00361	TCAL_12822	A0A553NBU9	A0A553PLW1	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.923
TCAL_00361	TCAL_14635	A0A553NBU9	A0A553P6P2	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.862
TCAL_00923	TCAL_00361	A0A553P5V6	A0A553NBU9	Acetyl-coenzyme A synthetase.	Uncharacterized protein.	0.923
TCAL_00923	TCAL_01296	A0A553P5V6	A0A553PDN4	Acetyl-coenzyme A synthetase.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.761
TCAL_00923	TCAL_02765	A0A553P5V6	A0A553NQH1	Acetyl-coenzyme A synthetase.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.948
TCAL_00923	TCAL_03960	A0A553P5V6	A0A553P409	Acetyl-coenzyme A synthetase.	Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.	0.894