34 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_02158	acidPPc domain-containing protein. (283 aa)
	TCAL_10992	acidPPc domain-containing protein. (329 aa)
	TCAL_00407	acidPPc domain-containing protein. (379 aa)
	TCAL_07657	Metallophos domain-containing protein. (698 aa)
	TCAL_02291	Endo/exonuclease/phosphatase domain-containing protein. (472 aa)
	TCAL_15136	Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide. (574 aa)
	TCAL_13985	TLC domain-containing protein. (370 aa)
	TCAL_02851	Metallophos domain-containing protein. (557 aa)
	TCAL_10005	Uncharacterized protein. (491 aa)
	TCAL_13065	DAGKc domain-containing protein. (565 aa)
	TCAL_01108	Endo/exonuclease/phosphatase domain-containing protein. (420 aa)
	TCAL_03949	Uncharacterized protein. (480 aa)
	TCAL_00196	DAGKc domain-containing protein. (689 aa)
	TCAL_01150	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. (274 aa)
	TCAL_09510	DAGKc domain-containing protein. (560 aa)
	TCAL_04534	Uncharacterized protein. (351 aa)
	TCAL_08531	Neutral ceramidase. (706 aa)
	TCAL_14599	Metallophos domain-containing protein. (584 aa)
	TCAL_04959	acidPPc domain-containing protein. (272 aa)
	TCAL_00010	Uncharacterized protein. (814 aa)
	TCAL_06952	TLC domain-containing protein. (360 aa)
	TCAL_16003	PAP2_C domain-containing protein. (502 aa)
	TCAL_04036	Uncharacterized protein. (266 aa)
	TCAL_07856	Uncharacterized protein. (276 aa)
	TCAL_06621	Lipid_DES domain-containing protein; Belongs to the fatty acid desaturase type 1 family. DEGS subfamily. (366 aa)
	TCAL_11601	PAP2_C domain-containing protein. (378 aa)
	TCAL_06070	Uncharacterized protein. (473 aa)
	TCAL_05790	Uncharacterized protein. (457 aa)
	TCAL_08326	Uncharacterized protein. (367 aa)
	TCAL_07064	Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide. (599 aa)
	TCAL_02996	Neutral ceramidase. (745 aa)
	TCAL_04808	Endo/exonuclease/phosphatase domain-containing protein. (366 aa)
	TCAL_06304	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. (278 aa)
	TCAL_07798	PAP2_C domain-containing protein. (505 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00010	TCAL_00407	A0A553PFC5	A0A553NDH6	Uncharacterized protein.	acidPPc domain-containing protein.	0.762
TCAL_00010	TCAL_01108	A0A553PFC5	A0A553P390	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.658
TCAL_00010	TCAL_01150	A0A553PFC5	A0A553P4Q1	Uncharacterized protein.	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	0.794
TCAL_00010	TCAL_02158	A0A553PFC5	A0A553N9F6	Uncharacterized protein.	acidPPc domain-containing protein.	0.766
TCAL_00010	TCAL_02291	A0A553PFC5	A0A553NQK7	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.878
TCAL_00010	TCAL_02851	A0A553PFC5	A0A553NXA5	Uncharacterized protein.	Metallophos domain-containing protein.	0.584
TCAL_00010	TCAL_02996	A0A553PFC5	A0A553PRR5	Uncharacterized protein.	Neutral ceramidase.	0.687
TCAL_00010	TCAL_04534	A0A553PFC5	A0A553PAW5	Uncharacterized protein.	Uncharacterized protein.	0.556
TCAL_00010	TCAL_04808	A0A553PFC5	A0A553PRV4	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.658
TCAL_00010	TCAL_06304	A0A553PFC5	A0A553PSS9	Uncharacterized protein.	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	0.695
TCAL_00010	TCAL_06621	A0A553PFC5	A0A553PK54	Uncharacterized protein.	Lipid_DES domain-containing protein; Belongs to the fatty acid desaturase type 1 family. DEGS subfamily.	0.800
TCAL_00010	TCAL_06952	A0A553PFC5	A0A553PFW4	Uncharacterized protein.	TLC domain-containing protein.	0.556
TCAL_00010	TCAL_07064	A0A553PFC5	A0A553PQG6	Uncharacterized protein.	Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide.	0.639
TCAL_00010	TCAL_07657	A0A553PFC5	A0A553NNB7	Uncharacterized protein.	Metallophos domain-containing protein.	0.639
TCAL_00010	TCAL_07798	A0A553PFC5	A0A553PTU5	Uncharacterized protein.	PAP2_C domain-containing protein.	0.593
TCAL_00010	TCAL_07856	A0A553PFC5	A0A553PJB4	Uncharacterized protein.	Uncharacterized protein.	0.658
TCAL_00010	TCAL_08326	A0A553PFC5	A0A553PPU6	Uncharacterized protein.	Uncharacterized protein.	0.556
TCAL_00010	TCAL_08531	A0A553PFC5	A0A553PBU1	Uncharacterized protein.	Neutral ceramidase.	0.687
TCAL_00010	TCAL_09510	A0A553PFC5	A0A553PAR2	Uncharacterized protein.	DAGKc domain-containing protein.	0.803
TCAL_00010	TCAL_10005	A0A553PFC5	A0A553NZL4	Uncharacterized protein.	Uncharacterized protein.	0.790