6 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_13065	DAGKc domain-containing protein. (565 aa)
	TCAL_03949	Uncharacterized protein. (480 aa)
	TCAL_00196	DAGKc domain-containing protein. (689 aa)
	TCAL_06070	Uncharacterized protein. (473 aa)
	TCAL_05790	Uncharacterized protein. (457 aa)
	TCAL_08326	Uncharacterized protein. (367 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00196	TCAL_03949	A0A553P4F5	A0A553P398	DAGKc domain-containing protein.	Uncharacterized protein.	0.808
TCAL_00196	TCAL_06070	A0A553P4F5	A0A553PNM8	DAGKc domain-containing protein.	Uncharacterized protein.	0.808
TCAL_00196	TCAL_08326	A0A553P4F5	A0A553PPU6	DAGKc domain-containing protein.	Uncharacterized protein.	0.617
TCAL_03949	TCAL_00196	A0A553P398	A0A553P4F5	Uncharacterized protein.	DAGKc domain-containing protein.	0.808
TCAL_03949	TCAL_05790	A0A553P398	A0A553PNZ4	Uncharacterized protein.	Uncharacterized protein.	0.808
TCAL_03949	TCAL_13065	A0A553P398	A0A553P1R4	Uncharacterized protein.	DAGKc domain-containing protein.	0.808
TCAL_05790	TCAL_03949	A0A553PNZ4	A0A553P398	Uncharacterized protein.	Uncharacterized protein.	0.808
TCAL_05790	TCAL_06070	A0A553PNZ4	A0A553PNM8	Uncharacterized protein.	Uncharacterized protein.	0.808
TCAL_05790	TCAL_08326	A0A553PNZ4	A0A553PPU6	Uncharacterized protein.	Uncharacterized protein.	0.617
TCAL_06070	TCAL_00196	A0A553PNM8	A0A553P4F5	Uncharacterized protein.	DAGKc domain-containing protein.	0.808
TCAL_06070	TCAL_05790	A0A553PNM8	A0A553PNZ4	Uncharacterized protein.	Uncharacterized protein.	0.808
TCAL_06070	TCAL_13065	A0A553PNM8	A0A553P1R4	Uncharacterized protein.	DAGKc domain-containing protein.	0.808
TCAL_08326	TCAL_00196	A0A553PPU6	A0A553P4F5	Uncharacterized protein.	DAGKc domain-containing protein.	0.617
TCAL_08326	TCAL_05790	A0A553PPU6	A0A553PNZ4	Uncharacterized protein.	Uncharacterized protein.	0.617
TCAL_08326	TCAL_13065	A0A553PPU6	A0A553P1R4	Uncharacterized protein.	DAGKc domain-containing protein.	0.617
TCAL_13065	TCAL_03949	A0A553P1R4	A0A553P398	DAGKc domain-containing protein.	Uncharacterized protein.	0.808
TCAL_13065	TCAL_06070	A0A553P1R4	A0A553PNM8	DAGKc domain-containing protein.	Uncharacterized protein.	0.808
TCAL_13065	TCAL_08326	A0A553P1R4	A0A553PPU6	DAGKc domain-containing protein.	Uncharacterized protein.	0.617