(47 nodes) Mixed, incl. UBX domain, and Hedgehog ligand biogenesis network (Tigriopus californicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_10276	AAA domain-containing protein; Belongs to the AAA ATPase family. (639 aa)
	TCAL_12264	U-box domain-containing protein. (967 aa)
	TCAL_06854	UBX domain-containing protein. (499 aa)
	TCAL_07145	Uncharacterized protein. (706 aa)
	TCAL_14348	Uncharacterized protein. (639 aa)
	TCAL_05594	AAA domain-containing protein; Belongs to the AAA ATPase family. (352 aa)
	TCAL_09920	Uncharacterized protein. (285 aa)
	TCAL_03733	Uncharacterized protein. (746 aa)
	TCAL_13160	Uncharacterized protein. (277 aa)
	TCAL_08029	UBX domain-containing protein. (867 aa)
	TCAL_10402	Uncharacterized protein. (574 aa)
	TCAL_02296	Uncharacterized protein. (566 aa)
	TCAL_04145	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (259 aa)
	TCAL_04146	Uncharacterized protein. (708 aa)
	TCAL_10231	Uncharacterized protein. (457 aa)
	TCAL_02506	UBX domain-containing protein. (539 aa)
	TCAL_01386	Uncharacterized protein. (567 aa)
	TCAL_04132	PRKCSH domain-containing protein. (797 aa)
	TCAL_09658	RING-type domain-containing protein. (398 aa)
	TCAL_05630	UBX domain-containing protein. (463 aa)
	TCAL_05288	PHB domain-containing protein. (407 aa)
	TCAL_04831	UBX domain-containing protein. (501 aa)
	TCAL_01185	MPN domain-containing protein. (600 aa)
	TCAL_12357	RING-type domain-containing protein. (200 aa)
	TCAL_08715	UBX domain-containing protein. (296 aa)
	TCAL_09055	RING-type domain-containing protein. (711 aa)
	TCAL_11455	BTB domain-containing protein. (754 aa)
	TCAL_15693	Josephin domain-containing protein. (368 aa)
	TCAL_11090	Uncharacterized protein. (348 aa)
	TCAL_01538	Uncharacterized protein. (959 aa)
	TCAL_01513	RING-type domain-containing protein. (361 aa)
	TCAL_07757	Uncharacterized protein. (472 aa)
	TCAL_11427	Uncharacterized protein. (672 aa)
	TCAL_15594	PHB domain-containing protein. (339 aa)
	TCAL_10807	Uncharacterized protein; Belongs to the AAA ATPase family. (845 aa)
	TCAL_08534	Uncharacterized protein. (699 aa)
	TCAL_00505	ATPase_AAA_core domain-containing protein. (833 aa)
	TCAL_00613	UBX domain-containing protein. (647 aa)
	TCAL_00678	Uncharacterized protein. (742 aa)
	TCAL_00675	UBA domain-containing protein. (356 aa)
	TCAL_08349	PHB domain-containing protein. (395 aa)
	TCAL_00141	Uncharacterized protein. (226 aa)
	TCAL_05017	RING-type domain-containing protein. (770 aa)
	TCAL_11600	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (275 aa)
	TCAL_07373	AAA domain-containing protein; Belongs to the AAA ATPase family. (483 aa)
	TCAL_08836	Uncharacterized protein. (453 aa)
	TCAL_11365	RING-type domain-containing protein. (520 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00141	TCAL_00505	A0A553PI79	A0A553PD98	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.555
TCAL_00141	TCAL_00613	A0A553PI79	A0A553PDV6	Uncharacterized protein.	UBX domain-containing protein.	0.451
TCAL_00141	TCAL_01386	A0A553PI79	A0A553NSS2	Uncharacterized protein.	Uncharacterized protein.	0.729
TCAL_00141	TCAL_01513	A0A553PI79	A0A553P6X2	Uncharacterized protein.	RING-type domain-containing protein.	0.545
TCAL_00141	TCAL_01538	A0A553PI79	A0A553P6W4	Uncharacterized protein.	Uncharacterized protein.	0.555
TCAL_00141	TCAL_04132	A0A553PI79	A0A553NTV2	Uncharacterized protein.	PRKCSH domain-containing protein.	0.729
TCAL_00141	TCAL_04145	A0A553PI79	A0A553NS81	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.711
TCAL_00141	TCAL_05017	A0A553PI79	A0A553PKV7	Uncharacterized protein.	RING-type domain-containing protein.	0.621
TCAL_00141	TCAL_05594	A0A553PI79	A0A553NES2	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.569
TCAL_00141	TCAL_06854	A0A553PI79	A0A553NDF8	Uncharacterized protein.	UBX domain-containing protein.	0.451
TCAL_00141	TCAL_07373	A0A553PI79	A0A553PND3	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.555
TCAL_00141	TCAL_09055	A0A553PI79	A0A553P394	Uncharacterized protein.	RING-type domain-containing protein.	0.621
TCAL_00141	TCAL_09658	A0A553PI79	A0A553NUE1	Uncharacterized protein.	RING-type domain-containing protein.	0.621
TCAL_00141	TCAL_10276	A0A553PI79	A0A553N864	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.555
TCAL_00141	TCAL_10807	A0A553PI79	A0A553PBM2	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.725
TCAL_00141	TCAL_11365	A0A553PI79	A0A553PQP0	Uncharacterized protein.	RING-type domain-containing protein.	0.621
TCAL_00141	TCAL_11600	A0A553PI79	A0A553PLT2	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.711
TCAL_00141	TCAL_12357	A0A553PI79	A0A553P0G6	Uncharacterized protein.	RING-type domain-containing protein.	0.634
TCAL_00505	TCAL_00141	A0A553PD98	A0A553PI79	ATPase_AAA_core domain-containing protein.	Uncharacterized protein.	0.555
TCAL_00505	TCAL_00613	A0A553PD98	A0A553PDV6	ATPase_AAA_core domain-containing protein.	UBX domain-containing protein.	0.650