56 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_03724	C2H2-type domain-containing protein. (1020 aa)
	TCAL_02129	Uncharacterized protein. (446 aa)
	TCAL_01485	Uncharacterized protein. (778 aa)
	TCAL_08422	Uncharacterized protein. (7568 aa)
	TCAL_05726	Uncharacterized protein. (378 aa)
	inx-3	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (379 aa)
	TCAL_13279	Uncharacterized protein. (239 aa)
	inx-5	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (366 aa)
	inx-6	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (247 aa)
	TCAL_02733	ZP domain-containing protein. (757 aa)
	TCAL_12928	Ig-like domain-containing protein. (176 aa)
	TCAL_02282	Uncharacterized protein. (727 aa)
	TCAL_05279	Ig-like domain-containing protein. (319 aa)
	TCAL_02762	Arrestin_C domain-containing protein. (339 aa)
	TCAL_16939	Uncharacterized protein. (449 aa)
	TCAL_08054	Uncharacterized protein. (478 aa)
	TCAL_06538	Uncharacterized protein. (320 aa)
	TCAL_08712	Uncharacterized protein. (359 aa)
	TCAL_01110	Uncharacterized protein. (945 aa)
	TCAL_11940	Uncharacterized protein. (962 aa)
	TCAL_03422	MH2 domain-containing protein. (472 aa)
	TCAL_04738	Uncharacterized protein. (1183 aa)
	TCAL_00282	Uncharacterized protein. (1184 aa)
	TCAL_03956	Chitin-binding type-2 domain-containing protein. (552 aa)
	TCAL_09601	Uncharacterized protein. (585 aa)
	TCAL_05410	MH2 domain-containing protein. (714 aa)
	TCAL_14890	Chitin-binding type-2 domain-containing protein. (546 aa)
	TCAL_11263	Uncharacterized protein. (902 aa)
	TCAL_03405	Uncharacterized protein. (975 aa)
	TCAL_03969	Uncharacterized protein. (843 aa)
	TCAL_04760	Uncharacterized protein. (1106 aa)
	TCAL_05394	Uncharacterized protein. (874 aa)
	TCAL_06727	Uncharacterized protein. (1031 aa)
	TCAL_06722	Uncharacterized protein. (789 aa)
	TCAL_09959	Uncharacterized protein. (212 aa)
	TCAL_01155	Uncharacterized protein. (254 aa)
	TCAL_01516	Uncharacterized protein. (1275 aa)
	TCAL_11756	Uncharacterized protein. (248 aa)
	TCAL_11681	Uncharacterized protein. (1571 aa)
	TCAL_01609	Uncharacterized protein. (3019 aa)
	TCAL_13804	Uncharacterized protein. (2444 aa)
	inx-20	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (381 aa)
	TCAL_11604	Uncharacterized protein. (739 aa)
	TCAL_11780	Uncharacterized protein. (723 aa)
	TCAL_12423	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family. (590 aa)
	TCAL_12045	Uncharacterized protein. (341 aa)
	TCAL_13120	Ig-like domain-containing protein. (272 aa)
	TCAL_09318	Uncharacterized protein. (989 aa)
	TCAL_12422	Ig-like domain-containing protein. (665 aa)
	TCAL_08514	Uncharacterized protein. (380 aa)
	TCAL_08518	Uncharacterized protein. (461 aa)
	inx-29	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (585 aa)
	inx-33	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (295 aa)
	inx-35	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (124 aa)
	inx-36	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (122 aa)
	inx-37	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (221 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00282	TCAL_01485	A0A553P282	A0A553N6Y9	Uncharacterized protein.	Uncharacterized protein.	0.521
TCAL_00282	TCAL_01609	A0A553P282	A0A553PAP1	Uncharacterized protein.	Uncharacterized protein.	0.450
TCAL_00282	TCAL_02282	A0A553P282	A0A553NP10	Uncharacterized protein.	Uncharacterized protein.	0.439
TCAL_00282	TCAL_02733	A0A553P282	A0A553NNP0	Uncharacterized protein.	ZP domain-containing protein.	0.418
TCAL_00282	TCAL_05394	A0A553P282	A0A553P475	Uncharacterized protein.	Uncharacterized protein.	0.422
TCAL_00282	TCAL_06538	A0A553P282	A0A553NYR3	Uncharacterized protein.	Uncharacterized protein.	0.593
TCAL_00282	TCAL_08054	A0A553P282	A0A553NR00	Uncharacterized protein.	Uncharacterized protein.	0.449
TCAL_00282	TCAL_08514	A0A553P282	A0A553PL02	Uncharacterized protein.	Uncharacterized protein.	0.589
TCAL_00282	TCAL_08518	A0A553P282	A0A553PL09	Uncharacterized protein.	Uncharacterized protein.	0.403
TCAL_00282	TCAL_11604	A0A553P282	A0A553PDB7	Uncharacterized protein.	Uncharacterized protein.	0.435
TCAL_00282	TCAL_11681	A0A553P282	A0A553P7N6	Uncharacterized protein.	Uncharacterized protein.	0.408
TCAL_00282	TCAL_11780	A0A553P282	A0A553PFS0	Uncharacterized protein.	Uncharacterized protein.	0.448
TCAL_00282	TCAL_12422	A0A553P282	A0A553PKS1	Uncharacterized protein.	Ig-like domain-containing protein.	0.484
TCAL_00282	TCAL_12928	A0A553P282	A0A553NNR0	Uncharacterized protein.	Ig-like domain-containing protein.	0.413
TCAL_00282	TCAL_13804	A0A553P282	A0A553PB50	Uncharacterized protein.	Uncharacterized protein.	0.407
TCAL_00282	inx-33	A0A553P282	A0A553PPY2	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.404
TCAL_00282	inx-37	A0A553P282	A0A553PQX4	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.417
TCAL_00282	inx-6	A0A553P282	A0A553NFN4	Uncharacterized protein.	Innexin; Structural component of the gap junctions. Belongs to the pannexin family.	0.426
TCAL_01110	TCAL_01485	A0A553P1B2	A0A553N6Y9	Uncharacterized protein.	Uncharacterized protein.	0.513
TCAL_01110	TCAL_01609	A0A553P1B2	A0A553PAP1	Uncharacterized protein.	Uncharacterized protein.	0.450