24 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_01485	Uncharacterized protein. (778 aa)
	TCAL_08422	Uncharacterized protein. (7568 aa)
	inx-5	Innexin; Structural component of the gap junctions. Belongs to the pannexin family. (366 aa)
	TCAL_02733	ZP domain-containing protein. (757 aa)
	TCAL_12928	Ig-like domain-containing protein. (176 aa)
	TCAL_02282	Uncharacterized protein. (727 aa)
	TCAL_08054	Uncharacterized protein. (478 aa)
	TCAL_06538	Uncharacterized protein. (320 aa)
	TCAL_08712	Uncharacterized protein. (359 aa)
	TCAL_11940	Uncharacterized protein. (962 aa)
	TCAL_04738	Uncharacterized protein. (1183 aa)
	TCAL_09601	Uncharacterized protein. (585 aa)
	TCAL_03969	Uncharacterized protein. (843 aa)
	TCAL_04760	Uncharacterized protein. (1106 aa)
	TCAL_05394	Uncharacterized protein. (874 aa)
	TCAL_06727	Uncharacterized protein. (1031 aa)
	TCAL_06722	Uncharacterized protein. (789 aa)
	TCAL_01155	Uncharacterized protein. (254 aa)
	TCAL_11756	Uncharacterized protein. (248 aa)
	TCAL_13804	Uncharacterized protein. (2444 aa)
	TCAL_11604	Uncharacterized protein. (739 aa)
	TCAL_09318	Uncharacterized protein. (989 aa)
	TCAL_12422	Ig-like domain-containing protein. (665 aa)
	TCAL_08514	Uncharacterized protein. (380 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01155	TCAL_06538	A0A553P4N7	A0A553NYR3	Uncharacterized protein.	Uncharacterized protein.	0.427
TCAL_01155	TCAL_08514	A0A553P4N7	A0A553PL02	Uncharacterized protein.	Uncharacterized protein.	0.472
TCAL_01155	TCAL_08712	A0A553P4N7	A0A553P0J8	Uncharacterized protein.	Uncharacterized protein.	0.443
TCAL_01155	TCAL_11756	A0A553P4N7	A0A553P7H2	Uncharacterized protein.	Uncharacterized protein.	0.403
TCAL_01155	TCAL_13804	A0A553P4N7	A0A553PB50	Uncharacterized protein.	Uncharacterized protein.	0.411
TCAL_01485	TCAL_02282	A0A553N6Y9	A0A553NP10	Uncharacterized protein.	Uncharacterized protein.	0.545
TCAL_01485	TCAL_02733	A0A553N6Y9	A0A553NNP0	Uncharacterized protein.	ZP domain-containing protein.	0.559
TCAL_01485	TCAL_03969	A0A553N6Y9	A0A553P403	Uncharacterized protein.	Uncharacterized protein.	0.521
TCAL_01485	TCAL_04738	A0A553N6Y9	A0A553P1V1	Uncharacterized protein.	Uncharacterized protein.	0.495
TCAL_01485	TCAL_04760	A0A553N6Y9	A0A553P454	Uncharacterized protein.	Uncharacterized protein.	0.510
TCAL_01485	TCAL_06538	A0A553N6Y9	A0A553NYR3	Uncharacterized protein.	Uncharacterized protein.	0.511
TCAL_01485	TCAL_06722	A0A553N6Y9	A0A553P4F4	Uncharacterized protein.	Uncharacterized protein.	0.518
TCAL_01485	TCAL_06727	A0A553N6Y9	A0A553P4C1	Uncharacterized protein.	Uncharacterized protein.	0.516
TCAL_01485	TCAL_08422	A0A553N6Y9	A0A553N9B3	Uncharacterized protein.	Uncharacterized protein.	0.526
TCAL_01485	TCAL_08514	A0A553N6Y9	A0A553PL02	Uncharacterized protein.	Uncharacterized protein.	0.479
TCAL_01485	TCAL_09318	A0A553N6Y9	A0A553PKD9	Uncharacterized protein.	Uncharacterized protein.	0.521
TCAL_01485	TCAL_09601	A0A553N6Y9	A0A553P2V6	Uncharacterized protein.	Uncharacterized protein.	0.519
TCAL_01485	TCAL_11604	A0A553N6Y9	A0A553PDB7	Uncharacterized protein.	Uncharacterized protein.	0.546
TCAL_01485	TCAL_11940	A0A553N6Y9	A0A553P1J9	Uncharacterized protein.	Uncharacterized protein.	0.505
TCAL_01485	TCAL_12422	A0A553N6Y9	A0A553PKS1	Uncharacterized protein.	Ig-like domain-containing protein.	0.495