8 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_10021	Uncharacterized protein. (1096 aa)
	TCAL_11614	Uncharacterized protein. (1281 aa)
	TCAL_12237	Uncharacterized protein. (1425 aa)
	TCAL_00230	Uncharacterized protein. (1301 aa)
	TCAL_04520	Uncharacterized protein. (1259 aa)
	TCAL_04975	Uncharacterized protein. (1593 aa)
	TCAL_01975	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family. (393 aa)
	TCAL_01986	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family. (321 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00230	TCAL_04520	A0A553P2S0	A0A553PD24	Uncharacterized protein.	Uncharacterized protein.	0.870
TCAL_00230	TCAL_04975	A0A553P2S0	A0A553PDB2	Uncharacterized protein.	Uncharacterized protein.	0.948
TCAL_01975	TCAL_10021	A0A553PND0	A0A553NX27	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	Uncharacterized protein.	0.662
TCAL_01975	TCAL_11614	A0A553PND0	A0A553NXV2	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	Uncharacterized protein.	0.480
TCAL_01986	TCAL_04520	A0A553PPW3	A0A553PD24	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	Uncharacterized protein.	0.797
TCAL_01986	TCAL_04975	A0A553PPW3	A0A553PDB2	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	Uncharacterized protein.	0.797
TCAL_01986	TCAL_10021	A0A553PPW3	A0A553NX27	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	Uncharacterized protein.	0.889
TCAL_01986	TCAL_11614	A0A553PPW3	A0A553NXV2	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	Uncharacterized protein.	0.804
TCAL_04520	TCAL_00230	A0A553PD24	A0A553P2S0	Uncharacterized protein.	Uncharacterized protein.	0.870
TCAL_04520	TCAL_01986	A0A553PD24	A0A553PPW3	Uncharacterized protein.	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	0.797
TCAL_04520	TCAL_04975	A0A553PD24	A0A553PDB2	Uncharacterized protein.	Uncharacterized protein.	0.948
TCAL_04520	TCAL_12237	A0A553PD24	A0A553P2R4	Uncharacterized protein.	Uncharacterized protein.	0.636
TCAL_04975	TCAL_00230	A0A553PDB2	A0A553P2S0	Uncharacterized protein.	Uncharacterized protein.	0.948
TCAL_04975	TCAL_01986	A0A553PDB2	A0A553PPW3	Uncharacterized protein.	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	0.797
TCAL_04975	TCAL_04520	A0A553PDB2	A0A553PD24	Uncharacterized protein.	Uncharacterized protein.	0.948
TCAL_04975	TCAL_10021	A0A553PDB2	A0A553NX27	Uncharacterized protein.	Uncharacterized protein.	0.462
TCAL_04975	TCAL_11614	A0A553PDB2	A0A553NXV2	Uncharacterized protein.	Uncharacterized protein.	0.462
TCAL_04975	TCAL_12237	A0A553PDB2	A0A553P2R4	Uncharacterized protein.	Uncharacterized protein.	0.606
TCAL_10021	TCAL_01975	A0A553NX27	A0A553PND0	Uncharacterized protein.	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	0.662
TCAL_10021	TCAL_01986	A0A553NX27	A0A553PPW3	Uncharacterized protein.	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	0.889