104 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_05714	Protein kinase domain-containing protein. (746 aa)
	TCAL_17234	IMD domain-containing protein. (117 aa)
	TCAL_10078	Uncharacterized protein. (4291 aa)
	TCAL_04421	Tyrosine-protein kinase. (538 aa)
	TCAL_03205	Protein kinase domain-containing protein. (411 aa)
	TCAL_10721	Uncharacterized protein. (928 aa)
	TCAL_17207	IMD domain-containing protein. (79 aa)
	TCAL_16246	Uncharacterized protein. (487 aa)
	TCAL_03182	Uncharacterized protein; Belongs to the integrin alpha chain family. (966 aa)
	TCAL_00473	Ig-like domain-containing protein. (298 aa)
	TCAL_15202	Uncharacterized protein. (1656 aa)
	TCAL_13413	Uncharacterized protein. (307 aa)
	TCAL_10350	Uncharacterized protein. (524 aa)
	TCAL_10815	Uncharacterized protein. (1841 aa)
	TCAL_02641	Fibrinogen C-terminal domain-containing protein. (198 aa)
	TCAL_01862	Uncharacterized protein. (1390 aa)
	TCAL_10896	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1198 aa)
	TCAL_01850	Uncharacterized protein. (1298 aa)
	TCAL_08223	Uncharacterized protein. (595 aa)
	TCAL_14153	LRRNT domain-containing protein. (141 aa)
	TCAL_15064	Fibronectin type-III domain-containing protein. (62 aa)
	TCAL_13929	Uncharacterized protein. (377 aa)
	TCAL_08053	Ig-like domain-containing protein. (225 aa)
	TCAL_05362	Uncharacterized protein. (116 aa)
	TCAL_11764	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (857 aa)
	TCAL_03759	Uncharacterized protein. (287 aa)
	TCAL_05961	Uncharacterized protein. (336 aa)
	TCAL_04168	SH2 domain-containing protein. (826 aa)
	TCAL_02473	Uncharacterized protein. (1016 aa)
	TCAL_12070	Uncharacterized protein. (703 aa)
	TCAL_01393	Uncharacterized protein. (934 aa)
	TCAL_10733	Uncharacterized protein. (988 aa)
	TCAL_12072	Uncharacterized protein. (707 aa)
	TCAL_03259	Uncharacterized protein. (1228 aa)
	TCAL_10059	Uncharacterized protein. (9067 aa)
	TCAL_11377	Uncharacterized protein. (237 aa)
	TCAL_13185	Ig-like domain-containing protein. (221 aa)
	TCAL_13186	Uncharacterized protein. (255 aa)
	TCAL_06649	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1092 aa)
	TCAL_09632	Uncharacterized protein. (393 aa)
	TCAL_01236	Uncharacterized protein. (1434 aa)
	TCAL_02420	Uncharacterized protein. (376 aa)
	TCAL_00208	A4_EXTRA domain-containing protein. (677 aa)
	TCAL_13596	Uncharacterized protein. (521 aa)
	TCAL_16236	Ig-like domain-containing protein. (170 aa)
	TCAL_13556	Uncharacterized protein. (1646 aa)
	TCAL_03162	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (209 aa)
	TCAL_10157	Ig-like domain-containing protein. (989 aa)
	TCAL_10159	Ig-like domain-containing protein. (1256 aa)
	TCAL_02220	CUB domain-containing protein. (303 aa)
	TCAL_01579	Ig-like domain-containing protein. (1275 aa)
	TCAL_05822	Ig-like domain-containing protein. (1014 aa)
	TCAL_01867	NARG2_C domain-containing protein. (990 aa)
	TCAL_06022	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (405 aa)
	TCAL_13620	Uncharacterized protein. (323 aa)
	TCAL_05821	Ig-like domain-containing protein. (330 aa)
	TCAL_16922	Uncharacterized protein. (702 aa)
	TCAL_02238	Ig-like domain-containing protein. (1381 aa)
	TCAL_13760	Uncharacterized protein. (298 aa)
	TCAL_01661	Uncharacterized protein. (1002 aa)
	TCAL_06356	Uncharacterized protein. (300 aa)
	TCAL_00573	Metallophos domain-containing protein. (663 aa)
	TCAL_07115	Integrin beta; Belongs to the integrin beta chain family. (825 aa)
	TCAL_09357	Uncharacterized protein. (2339 aa)
	TCAL_00709	Integrin beta. (870 aa)
	TCAL_10491	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (368 aa)
	TCAL_14558	Uncharacterized protein. (587 aa)
	TCAL_07007	Uncharacterized protein. (904 aa)
	TCAL_00639	Uncharacterized protein. (2463 aa)
	TCAL_11864	Uncharacterized protein. (2009 aa)
	TCAL_10516	Uncharacterized protein. (1779 aa)
	TCAL_10517	Uncharacterized protein. (856 aa)
	TCAL_07591	Uncharacterized protein. (911 aa)
	TCAL_07590	Uncharacterized protein. (509 aa)
	TCAL_10625	G_PROTEIN_RECEP_F2_4 domain-containing protein. (481 aa)
	TCAL_11387	Uncharacterized protein. (2172 aa)
	TCAL_04062	Uncharacterized protein. (1392 aa)
	TCAL_04063	Uncharacterized protein. (2490 aa)
	TCAL_10520	Uncharacterized protein. (2086 aa)
	TCAL_00165	Uncharacterized protein. (601 aa)
	TCAL_04041	Uncharacterized protein. (1135 aa)
	TCAL_08993	Chitin-binding type-2 domain-containing protein. (1125 aa)
	TCAL_08508	Uncharacterized protein. (827 aa)
	TCAL_15340	Uncharacterized protein. (519 aa)
	TCAL_06809	Uncharacterized protein. (447 aa)
	TCAL_09312	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1004 aa)
	TCAL_12443	Uncharacterized protein. (503 aa)
	TCAL_08516	Uncharacterized protein. (1549 aa)
	TCAL_16666	Uncharacterized protein. (216 aa)
	TCAL_06817	Uncharacterized protein. (260 aa)
	TCAL_07734	Uncharacterized protein. (1538 aa)
	TCAL_15286	Ig-like domain-containing protein. (143 aa)
	TCAL_09303	Uncharacterized protein. (361 aa)
	TCAL_06219	Uncharacterized protein. (3296 aa)
	TCAL_12654	Uncharacterized protein. (318 aa)
	TCAL_12180	Fibrinogen C-terminal domain-containing protein. (742 aa)
	TCAL_05813	Uncharacterized protein. (735 aa)
	TCAL_12668	Integrin beta; Belongs to the integrin beta chain family. (809 aa)
	TCAL_11730	Uncharacterized protein. (1054 aa)
	TCAL_12994	Uncharacterized protein. (339 aa)
	TCAL_09991	Uncharacterized protein. (1742 aa)
	TCAL_12882	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1816 aa)
	TCAL_13704	Uncharacterized protein. (655 aa)
	TCAL_10964	Uncharacterized protein. (774 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00165	TCAL_01393	A0A553PI52	A0A553NUX3	Uncharacterized protein.	Uncharacterized protein.	0.476
TCAL_00165	TCAL_01579	A0A553PI52	A0A553P716	Uncharacterized protein.	Ig-like domain-containing protein.	0.431
TCAL_00165	TCAL_01850	A0A553PI52	A0A553NF68	Uncharacterized protein.	Uncharacterized protein.	0.493
TCAL_00165	TCAL_01862	A0A553PI52	A0A553NDT1	Uncharacterized protein.	Uncharacterized protein.	0.493
TCAL_00165	TCAL_02238	A0A553PI52	A0A553P8L6	Uncharacterized protein.	Ig-like domain-containing protein.	0.638
TCAL_00165	TCAL_02420	A0A553PI52	A0A553P052	Uncharacterized protein.	Uncharacterized protein.	0.570
TCAL_00165	TCAL_02641	A0A553PI52	A0A553NDI0	Uncharacterized protein.	Fibrinogen C-terminal domain-containing protein.	0.420
TCAL_00165	TCAL_04041	A0A553PI52	A0A553PIE9	Uncharacterized protein.	Uncharacterized protein.	0.465
TCAL_00165	TCAL_04062	A0A553PI52	A0A553PI00	Uncharacterized protein.	Uncharacterized protein.	0.465
TCAL_00165	TCAL_04063	A0A553PI52	A0A553PI08	Uncharacterized protein.	Uncharacterized protein.	0.465
TCAL_00165	TCAL_04421	A0A553PI52	A0A553N801	Uncharacterized protein.	Tyrosine-protein kinase.	0.589
TCAL_00165	TCAL_05714	A0A553PI52	A0A553N6D4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.585
TCAL_00165	TCAL_05821	A0A553PI52	A0A553P829	Uncharacterized protein.	Ig-like domain-containing protein.	0.431
TCAL_00165	TCAL_05822	A0A553PI52	A0A553P7B3	Uncharacterized protein.	Ig-like domain-containing protein.	0.431
TCAL_00165	TCAL_06022	A0A553PI52	A0A553P7V5	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.476
TCAL_00165	TCAL_06219	A0A553PI52	A0A553PM54	Uncharacterized protein.	Uncharacterized protein.	0.465
TCAL_00165	TCAL_07590	A0A553PI52	A0A553PGA7	Uncharacterized protein.	Uncharacterized protein.	0.601
TCAL_00165	TCAL_07591	A0A553PI52	A0A553PGA6	Uncharacterized protein.	Uncharacterized protein.	0.601
TCAL_00165	TCAL_07734	A0A553PI52	A0A553PLJ0	Uncharacterized protein.	Uncharacterized protein.	0.420
TCAL_00165	TCAL_08223	A0A553PI52	A0A553NFA0	Uncharacterized protein.	Uncharacterized protein.	0.465