69 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_05714	Protein kinase domain-containing protein. (746 aa)
	TCAL_10078	Uncharacterized protein. (4291 aa)
	TCAL_04421	Tyrosine-protein kinase. (538 aa)
	TCAL_03205	Protein kinase domain-containing protein. (411 aa)
	TCAL_16246	Uncharacterized protein. (487 aa)
	TCAL_03182	Uncharacterized protein; Belongs to the integrin alpha chain family. (966 aa)
	TCAL_00473	Ig-like domain-containing protein. (298 aa)
	TCAL_15202	Uncharacterized protein. (1656 aa)
	TCAL_10350	Uncharacterized protein. (524 aa)
	TCAL_10815	Uncharacterized protein. (1841 aa)
	TCAL_02641	Fibrinogen C-terminal domain-containing protein. (198 aa)
	TCAL_01862	Uncharacterized protein. (1390 aa)
	TCAL_10896	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1198 aa)
	TCAL_01850	Uncharacterized protein. (1298 aa)
	TCAL_08223	Uncharacterized protein. (595 aa)
	TCAL_15064	Fibronectin type-III domain-containing protein. (62 aa)
	TCAL_05362	Uncharacterized protein. (116 aa)
	TCAL_11764	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (857 aa)
	TCAL_04168	SH2 domain-containing protein. (826 aa)
	TCAL_02473	Uncharacterized protein. (1016 aa)
	TCAL_01393	Uncharacterized protein. (934 aa)
	TCAL_10733	Uncharacterized protein. (988 aa)
	TCAL_10059	Uncharacterized protein. (9067 aa)
	TCAL_11377	Uncharacterized protein. (237 aa)
	TCAL_13185	Ig-like domain-containing protein. (221 aa)
	TCAL_13186	Uncharacterized protein. (255 aa)
	TCAL_06649	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1092 aa)
	TCAL_09632	Uncharacterized protein. (393 aa)
	TCAL_00208	A4_EXTRA domain-containing protein. (677 aa)
	TCAL_13596	Uncharacterized protein. (521 aa)
	TCAL_16236	Ig-like domain-containing protein. (170 aa)
	TCAL_13556	Uncharacterized protein. (1646 aa)
	TCAL_03162	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (209 aa)
	TCAL_02220	CUB domain-containing protein. (303 aa)
	TCAL_01867	NARG2_C domain-containing protein. (990 aa)
	TCAL_06022	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (405 aa)
	TCAL_13620	Uncharacterized protein. (323 aa)
	TCAL_00573	Metallophos domain-containing protein. (663 aa)
	TCAL_07115	Integrin beta; Belongs to the integrin beta chain family. (825 aa)
	TCAL_09357	Uncharacterized protein. (2339 aa)
	TCAL_00709	Integrin beta. (870 aa)
	TCAL_10491	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (368 aa)
	TCAL_07007	Uncharacterized protein. (904 aa)
	TCAL_10516	Uncharacterized protein. (1779 aa)
	TCAL_10517	Uncharacterized protein. (856 aa)
	TCAL_07591	Uncharacterized protein. (911 aa)
	TCAL_07590	Uncharacterized protein. (509 aa)
	TCAL_11387	Uncharacterized protein. (2172 aa)
	TCAL_04062	Uncharacterized protein. (1392 aa)
	TCAL_04063	Uncharacterized protein. (2490 aa)
	TCAL_10520	Uncharacterized protein. (2086 aa)
	TCAL_04041	Uncharacterized protein. (1135 aa)
	TCAL_08993	Chitin-binding type-2 domain-containing protein. (1125 aa)
	TCAL_08508	Uncharacterized protein. (827 aa)
	TCAL_06809	Uncharacterized protein. (447 aa)
	TCAL_09312	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1004 aa)
	TCAL_08516	Uncharacterized protein. (1549 aa)
	TCAL_06817	Uncharacterized protein. (260 aa)
	TCAL_07734	Uncharacterized protein. (1538 aa)
	TCAL_15286	Ig-like domain-containing protein. (143 aa)
	TCAL_06219	Uncharacterized protein. (3296 aa)
	TCAL_12180	Fibrinogen C-terminal domain-containing protein. (742 aa)
	TCAL_05813	Uncharacterized protein. (735 aa)
	TCAL_12668	Integrin beta; Belongs to the integrin beta chain family. (809 aa)
	TCAL_11730	Uncharacterized protein. (1054 aa)
	TCAL_12994	Uncharacterized protein. (339 aa)
	TCAL_09991	Uncharacterized protein. (1742 aa)
	TCAL_12882	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1816 aa)
	TCAL_13704	Uncharacterized protein. (655 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00208	TCAL_00709	A0A553P1N8	A0A553PCM9	A4_EXTRA domain-containing protein.	Integrin beta.	0.511
TCAL_00208	TCAL_01867	A0A553P1N8	A0A553P7G1	A4_EXTRA domain-containing protein.	NARG2_C domain-containing protein.	0.590
TCAL_00208	TCAL_02473	A0A553P1N8	A0A553NT99	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.505
TCAL_00208	TCAL_02641	A0A553P1N8	A0A553NDI0	A4_EXTRA domain-containing protein.	Fibrinogen C-terminal domain-containing protein.	0.508
TCAL_00208	TCAL_03182	A0A553P1N8	A0A553N9V0	A4_EXTRA domain-containing protein.	Uncharacterized protein; Belongs to the integrin alpha chain family.	0.436
TCAL_00208	TCAL_04041	A0A553P1N8	A0A553PIE9	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.497
TCAL_00208	TCAL_04062	A0A553P1N8	A0A553PI00	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.497
TCAL_00208	TCAL_04063	A0A553P1N8	A0A553PI08	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.497
TCAL_00208	TCAL_04421	A0A553P1N8	A0A553N801	A4_EXTRA domain-containing protein.	Tyrosine-protein kinase.	0.441
TCAL_00208	TCAL_05362	A0A553P1N8	A0A553NP65	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.590
TCAL_00208	TCAL_06219	A0A553P1N8	A0A553PM54	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.497
TCAL_00208	TCAL_06649	A0A553P1N8	A0A553NY07	A4_EXTRA domain-containing protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.436
TCAL_00208	TCAL_07115	A0A553P1N8	A0A553PAT9	A4_EXTRA domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.511
TCAL_00208	TCAL_07734	A0A553P1N8	A0A553PLJ0	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.508
TCAL_00208	TCAL_08223	A0A553P1N8	A0A553NFA0	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.497
TCAL_00208	TCAL_08508	A0A553P1N8	A0A553PJ96	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.497
TCAL_00208	TCAL_09312	A0A553P1N8	A0A553PJZ4	A4_EXTRA domain-containing protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.436
TCAL_00208	TCAL_09357	A0A553P1N8	A0A553PBP4	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.497
TCAL_00208	TCAL_10350	A0A553P1N8	A0A553NCS1	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.979
TCAL_00208	TCAL_10516	A0A553P1N8	A0A553PG23	A4_EXTRA domain-containing protein.	Uncharacterized protein.	0.508