15 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_10078	Uncharacterized protein. (4291 aa)
	TCAL_01862	Uncharacterized protein. (1390 aa)
	TCAL_01850	Uncharacterized protein. (1298 aa)
	TCAL_08223	Uncharacterized protein. (595 aa)
	TCAL_11764	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (857 aa)
	TCAL_01393	Uncharacterized protein. (934 aa)
	TCAL_10059	Uncharacterized protein. (9067 aa)
	TCAL_13185	Ig-like domain-containing protein. (221 aa)
	TCAL_13186	Uncharacterized protein. (255 aa)
	TCAL_06022	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (405 aa)
	TCAL_09357	Uncharacterized protein. (2339 aa)
	TCAL_11387	Uncharacterized protein. (2172 aa)
	TCAL_04041	Uncharacterized protein. (1135 aa)
	TCAL_06219	Uncharacterized protein. (3296 aa)
	TCAL_12994	Uncharacterized protein. (339 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01393	TCAL_01850	A0A553NUX3	A0A553NF68	Uncharacterized protein.	Uncharacterized protein.	0.953
TCAL_01393	TCAL_01862	A0A553NUX3	A0A553NDT1	Uncharacterized protein.	Uncharacterized protein.	0.970
TCAL_01393	TCAL_04041	A0A553NUX3	A0A553PIE9	Uncharacterized protein.	Uncharacterized protein.	0.895
TCAL_01393	TCAL_06022	A0A553NUX3	A0A553P7V5	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.573
TCAL_01393	TCAL_06219	A0A553NUX3	A0A553PM54	Uncharacterized protein.	Uncharacterized protein.	0.895
TCAL_01393	TCAL_08223	A0A553NUX3	A0A553NFA0	Uncharacterized protein.	Uncharacterized protein.	0.895
TCAL_01393	TCAL_09357	A0A553NUX3	A0A553PBP4	Uncharacterized protein.	Uncharacterized protein.	0.895
TCAL_01393	TCAL_10059	A0A553NUX3	A0A553NXN7	Uncharacterized protein.	Uncharacterized protein.	0.867
TCAL_01393	TCAL_10078	A0A553NUX3	A0A553N6Y6	Uncharacterized protein.	Uncharacterized protein.	0.551
TCAL_01393	TCAL_11387	A0A553NUX3	A0A553PHS2	Uncharacterized protein.	Uncharacterized protein.	0.895
TCAL_01393	TCAL_11764	A0A553NUX3	A0A553NPG3	Uncharacterized protein.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.895
TCAL_01393	TCAL_12994	A0A553NUX3	A0A553PPK1	Uncharacterized protein.	Uncharacterized protein.	0.867
TCAL_01393	TCAL_13185	A0A553NUX3	A0A553NXY0	Uncharacterized protein.	Ig-like domain-containing protein.	0.867
TCAL_01393	TCAL_13186	A0A553NUX3	A0A553NXY5	Uncharacterized protein.	Uncharacterized protein.	0.969
TCAL_01850	TCAL_01393	A0A553NF68	A0A553NUX3	Uncharacterized protein.	Uncharacterized protein.	0.953
TCAL_01850	TCAL_01862	A0A553NF68	A0A553NDT1	Uncharacterized protein.	Uncharacterized protein.	0.675
TCAL_01850	TCAL_04041	A0A553NF68	A0A553PIE9	Uncharacterized protein.	Uncharacterized protein.	0.757
TCAL_01850	TCAL_06022	A0A553NF68	A0A553P7V5	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.976
TCAL_01850	TCAL_06219	A0A553NF68	A0A553PM54	Uncharacterized protein.	Uncharacterized protein.	0.757
TCAL_01850	TCAL_08223	A0A553NF68	A0A553NFA0	Uncharacterized protein.	Uncharacterized protein.	0.757