7 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_13504	Uncharacterized protein. (342 aa)
	TCAL_03134	Uncharacterized protein. (969 aa)
	TCAL_09057	Uncharacterized protein. (779 aa)
	TCAL_06515	Uncharacterized protein. (766 aa)
	TCAL_09495	Uncharacterized protein. (404 aa)
	TCAL_13788	Uncharacterized protein. (475 aa)
	TCAL_06812	Uncharacterized protein. (534 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_03134	TCAL_06515	A0A553P1N9	A0A553P4F3	Uncharacterized protein.	Uncharacterized protein.	0.457
TCAL_03134	TCAL_09495	A0A553P1N9	A0A553PC33	Uncharacterized protein.	Uncharacterized protein.	0.405
TCAL_06515	TCAL_03134	A0A553P4F3	A0A553P1N9	Uncharacterized protein.	Uncharacterized protein.	0.457
TCAL_06812	TCAL_13504	A0A553PLD4	A0A553NX96	Uncharacterized protein.	Uncharacterized protein.	0.447
TCAL_09057	TCAL_09495	A0A553P228	A0A553PC33	Uncharacterized protein.	Uncharacterized protein.	0.479
TCAL_09057	TCAL_13504	A0A553P228	A0A553NX96	Uncharacterized protein.	Uncharacterized protein.	0.411
TCAL_09495	TCAL_03134	A0A553PC33	A0A553P1N9	Uncharacterized protein.	Uncharacterized protein.	0.405
TCAL_09495	TCAL_09057	A0A553PC33	A0A553P228	Uncharacterized protein.	Uncharacterized protein.	0.479
TCAL_09495	TCAL_13788	A0A553PC33	A0A553PJP7	Uncharacterized protein.	Uncharacterized protein.	0.430
TCAL_13504	TCAL_06812	A0A553NX96	A0A553PLD4	Uncharacterized protein.	Uncharacterized protein.	0.447
TCAL_13504	TCAL_09057	A0A553NX96	A0A553P228	Uncharacterized protein.	Uncharacterized protein.	0.411
TCAL_13504	TCAL_13788	A0A553NX96	A0A553PJP7	Uncharacterized protein.	Uncharacterized protein.	0.478
TCAL_13788	TCAL_09495	A0A553PJP7	A0A553PC33	Uncharacterized protein.	Uncharacterized protein.	0.430
TCAL_13788	TCAL_13504	A0A553PJP7	A0A553NX96	Uncharacterized protein.	Uncharacterized protein.	0.478