5 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_05214	G_PROTEIN_RECEP_F3_4 domain-containing protein. (1049 aa)
	TCAL_01141	Uncharacterized protein. (1408 aa)
	TCAL_16895	Uncharacterized protein. (360 aa)
	TCAL_06811	Uncharacterized protein. (544 aa)
	TCAL_04329	Uncharacterized protein. (1384 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01141	TCAL_04329	A0A553P2P6	A0A553PT26	Uncharacterized protein.	Uncharacterized protein.	0.464
TCAL_01141	TCAL_16895	A0A553P2P6	A0A553P807	Uncharacterized protein.	Uncharacterized protein.	0.429
TCAL_04329	TCAL_01141	A0A553PT26	A0A553P2P6	Uncharacterized protein.	Uncharacterized protein.	0.464
TCAL_04329	TCAL_05214	A0A553PT26	A0A553NWY4	Uncharacterized protein.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.417
TCAL_04329	TCAL_06811	A0A553PT26	A0A553PLD3	Uncharacterized protein.	Uncharacterized protein.	0.556
TCAL_05214	TCAL_04329	A0A553NWY4	A0A553PT26	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Uncharacterized protein.	0.417
TCAL_06811	TCAL_04329	A0A553PLD3	A0A553PT26	Uncharacterized protein.	Uncharacterized protein.	0.556
TCAL_16895	TCAL_01141	A0A553P807	A0A553P2P6	Uncharacterized protein.	Uncharacterized protein.	0.429