(19 nodes) Mixed, incl. Dynactin complex, and Dynein light intermediate chain binding network (Tigriopus californicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_03671	Uncharacterized protein. (506 aa)
	TCAL_14365	Uncharacterized protein. (2834 aa)
	TCAL_11495	Uncharacterized protein. (376 aa)
	TCAL_07699	Uncharacterized protein; Belongs to the actin family. (376 aa)
	TCAL_11279	Uncharacterized protein. (184 aa)
	TCAL_07241	Uncharacterized protein. (338 aa)
	TCAL_13202	Dynein light chain. (116 aa)
	TCAL_02900	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (286 aa)
	TCAL_08161	Uncharacterized protein. (3367 aa)
	TCAL_01586	Uncharacterized protein; Belongs to the actin family. (400 aa)
	TCAL_01606	Uncharacterized protein. (1418 aa)
	TCAL_14595	Uncharacterized protein. (200 aa)
	TCAL_12005	Uncharacterized protein. (189 aa)
	TCAL_03840	FAM193_C domain-containing protein. (1621 aa)
	TCAL_00046	CAP-Gly domain-containing protein. (1243 aa)
	TCAL_05336	DHC_N2 domain-containing protein. (1115 aa)
	TCAL_05335	AAA_8 domain-containing protein. (1359 aa)
	TCAL_06782	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (122 aa)
	TCAL_05888	Uncharacterized protein. (411 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00046	TCAL_01586	A0A553PHH1	A0A553P8Q8	CAP-Gly domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.990
TCAL_00046	TCAL_02900	A0A553PHH1	A0A553NZK5	CAP-Gly domain-containing protein.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.928
TCAL_00046	TCAL_03671	A0A553PHH1	A0A553N7J1	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.991
TCAL_00046	TCAL_05335	A0A553PHH1	A0A553PHZ2	CAP-Gly domain-containing protein.	AAA_8 domain-containing protein.	0.635
TCAL_00046	TCAL_05336	A0A553PHH1	A0A553PHZ0	CAP-Gly domain-containing protein.	DHC_N2 domain-containing protein.	0.635
TCAL_00046	TCAL_05888	A0A553PHH1	A0A553PQS2	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.999
TCAL_00046	TCAL_06782	A0A553PHH1	A0A553PP61	CAP-Gly domain-containing protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.970
TCAL_00046	TCAL_07241	A0A553PHH1	A0A553NV21	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.848
TCAL_00046	TCAL_07699	A0A553PHH1	A0A553NET1	CAP-Gly domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.750
TCAL_00046	TCAL_08161	A0A553PHH1	A0A553P3T3	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.804
TCAL_00046	TCAL_11279	A0A553PHH1	A0A553NSV2	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.989
TCAL_00046	TCAL_11495	A0A553PHH1	A0A553NEH7	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.987
TCAL_00046	TCAL_12005	A0A553PHH1	A0A553PF15	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.989
TCAL_00046	TCAL_13202	A0A553PHH1	A0A553NZC7	CAP-Gly domain-containing protein.	Dynein light chain.	0.696
TCAL_00046	TCAL_14365	A0A553PHH1	A0A553NBI9	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.804
TCAL_00046	TCAL_14595	A0A553PHH1	A0A553PD64	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.993
TCAL_01586	TCAL_00046	A0A553P8Q8	A0A553PHH1	Uncharacterized protein; Belongs to the actin family.	CAP-Gly domain-containing protein.	0.990
TCAL_01586	TCAL_02900	A0A553P8Q8	A0A553NZK5	Uncharacterized protein; Belongs to the actin family.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.946
TCAL_01586	TCAL_03671	A0A553P8Q8	A0A553N7J1	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.995
TCAL_01586	TCAL_03840	A0A553P8Q8	A0A553PFD2	Uncharacterized protein; Belongs to the actin family.	FAM193_C domain-containing protein.	0.631