29 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_06668	Uncharacterized protein. (159 aa)
	TCAL_07458	Uncharacterized protein. (380 aa)
	TCAL_03690	Uncharacterized protein. (1043 aa)
	TCAL_00423	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1005 aa)
	TCAL_05596	Signal transducer and activator of transcription. (817 aa)
	TCAL_13933	Uncharacterized protein. (124 aa)
	TCAL_02275	Uncharacterized protein. (867 aa)
	TCAL_02313	Uncharacterized protein. (987 aa)
	TCAL_03106	Uncharacterized protein. (1834 aa)
	TCAL_16955	Uncharacterized protein. (187 aa)
	TCAL_16954	Recep_L_domain domain-containing protein. (101 aa)
	TCAL_09701	Uncharacterized protein. (1702 aa)
	TCAL_08883	Uncharacterized protein. (1216 aa)
	TCAL_04820	Uncharacterized protein. (1710 aa)
	TCAL_05450	Uncharacterized protein. (257 aa)
	TCAL_05829	PH domain-containing protein. (634 aa)
	TCAL_01521	Uncharacterized protein. (669 aa)
	TCAL_14629	IRS-type PTB domain-containing protein. (415 aa)
	TCAL_00691	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1278 aa)
	TCAL_00661	Uncharacterized protein. (459 aa)
	TCAL_04037	Uncharacterized protein. (1122 aa)
	TCAL_11860	Protein kinase domain-containing protein. (870 aa)
	TCAL_08612	Protein kinase domain-containing protein. (512 aa)
	TCAL_01723	Uncharacterized protein. (1350 aa)
	TCAL_01980	Uncharacterized protein. (1205 aa)
	TCAL_17051	SH2 domain-containing protein. (426 aa)
	TCAL_09892	Uncharacterized protein. (760 aa)
	TCAL_14524	SH3 domain-containing protein. (250 aa)
	TCAL_13988	Uncharacterized protein. (157 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00423	TCAL_00661	A0A553ND84	A0A553PBV1	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.989
TCAL_00423	TCAL_01521	A0A553ND84	A0A553P884	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.530
TCAL_00423	TCAL_01723	A0A553ND84	A0A553PML8	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.719
TCAL_00423	TCAL_01980	A0A553ND84	A0A553PPY8	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.521
TCAL_00423	TCAL_02275	A0A553ND84	A0A553NNL2	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.583
TCAL_00423	TCAL_02313	A0A553ND84	A0A553NNN4	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.597
TCAL_00423	TCAL_03106	A0A553ND84	A0A553NNQ1	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.570
TCAL_00423	TCAL_03690	A0A553ND84	A0A553N8Z9	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.816
TCAL_00423	TCAL_04037	A0A553ND84	A0A553PHI2	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.852
TCAL_00423	TCAL_05450	A0A553ND84	A0A553NZI9	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.723
TCAL_00423	TCAL_05829	A0A553ND84	A0A553P7F8	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	PH domain-containing protein.	0.690
TCAL_00423	TCAL_06668	A0A553ND84	A0A553N746	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.604
TCAL_00423	TCAL_07458	A0A553ND84	A0A553N840	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.517
TCAL_00423	TCAL_08612	A0A553ND84	A0A553PLS7	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Protein kinase domain-containing protein.	0.734
TCAL_00423	TCAL_08883	A0A553ND84	A0A553NT88	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.706
TCAL_00423	TCAL_09701	A0A553ND84	A0A553NPD9	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.597
TCAL_00423	TCAL_09892	A0A553ND84	A0A553PR27	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.783
TCAL_00423	TCAL_11860	A0A553ND84	A0A553PI94	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Protein kinase domain-containing protein.	0.618
TCAL_00423	TCAL_13933	A0A553ND84	A0A553NJM5	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.608
TCAL_00423	TCAL_13988	A0A553ND84	A0A553PSC9	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.608