117 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_02146	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (954 aa)
	TCAL_09265	Uncharacterized protein. (302 aa)
	TCAL_10923	Uncharacterized protein. (1021 aa)
	TCAL_13240	G_PROTEIN_RECEP_F2_4 domain-containing protein. (1013 aa)
	TCAL_02160	GPS domain-containing protein. (966 aa)
	TCAL_05719	Uncharacterized protein. (928 aa)
	TCAL_02124	Uncharacterized protein. (765 aa)
	TCAL_09264	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (811 aa)
	TCAL_02125	LRRCT domain-containing protein. (944 aa)
	TCAL_02047	Uncharacterized protein. (229 aa)
	TCAL_11039	DUF3456 domain-containing protein. (226 aa)
	TCAL_11258	TIR domain-containing protein; Belongs to the Toll-like receptor family. (1624 aa)
	TCAL_13108	Uncharacterized protein. (413 aa)
	TCAL_03897	FABD domain-containing protein. (981 aa)
	TCAL_07276	TIR domain-containing protein. (1466 aa)
	TCAL_07138	TIR domain-containing protein. (1486 aa)
	TCAL_07278	TIR domain-containing protein. (1478 aa)
	TCAL_07279	TIR domain-containing protein. (1369 aa)
	TCAL_01835	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1369 aa)
	TCAL_01860	Uncharacterized protein. (386 aa)
	TCAL_07281	TIR domain-containing protein. (1471 aa)
	TCAL_06863	Chitin-binding type-4 domain-containing protein. (766 aa)
	TCAL_15258	Uncharacterized protein. (631 aa)
	TCAL_14297	G_PROTEIN_RECEP_F2_4 domain-containing protein. (490 aa)
	TCAL_17351	Ig-like domain-containing protein. (102 aa)
	TCAL_08034	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1300 aa)
	TCAL_07819	Uncharacterized protein. (99 aa)
	TCAL_03292	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (700 aa)
	TCAL_04382	LRRCT domain-containing protein. (516 aa)
	TCAL_09076	LRRCT domain-containing protein. (777 aa)
	TCAL_04365	Uncharacterized protein. (2025 aa)
	TCAL_05163	Uncharacterized protein. (607 aa)
	TCAL_11126	Uncharacterized protein. (367 aa)
	TCAL_16931	SUEL-type lectin domain-containing protein. (338 aa)
	TCAL_09353	Uncharacterized protein. (1032 aa)
	TCAL_10233	Uncharacterized protein. (991 aa)
	TCAL_10234	Ig-like domain-containing protein. (241 aa)
	TCAL_14203	Fibronectin type-III domain-containing protein. (768 aa)
	TCAL_14207	Uncharacterized protein. (649 aa)
	TCAL_01382	Uncharacterized protein. (1124 aa)
	TCAL_03262	Uncharacterized protein. (1366 aa)
	TCAL_11013	TIR domain-containing protein; Belongs to the Toll-like receptor family. (1054 aa)
	TCAL_03065	Uncharacterized protein. (671 aa)
	TCAL_06934	Ig-like domain-containing protein. (240 aa)
	TCAL_10749	Uncharacterized protein. (836 aa)
	TCAL_03060	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1167 aa)
	TCAL_11021	Uncharacterized protein. (1084 aa)
	TCAL_15145	Ig-like domain-containing protein. (153 aa)
	TCAL_01413	LRRCT domain-containing protein. (1706 aa)
	TCAL_05083	Uncharacterized protein. (1347 aa)
	TCAL_15159	GPS domain-containing protein. (1056 aa)
	TCAL_07630	Uncharacterized protein. (1355 aa)
	TCAL_13311	Uncharacterized protein. (808 aa)
	TCAL_02787	Uncharacterized protein. (1023 aa)
	TCAL_17255	Uncharacterized protein. (217 aa)
	TCAL_11549	Ig-like domain-containing protein. (872 aa)
	TCAL_11548	Chitin-binding type-4 domain-containing protein. (354 aa)
	TCAL_09649	Uncharacterized protein. (1056 aa)
	TCAL_13690	Uncharacterized protein. (855 aa)
	TCAL_16447	Uncharacterized protein. (550 aa)
	TCAL_16449	SUEL-type lectin domain-containing protein. (698 aa)
	TCAL_10296	Uncharacterized protein. (465 aa)
	TCAL_05187	Uncharacterized protein. (1069 aa)
	TCAL_12813	Uncharacterized protein. (716 aa)
	TCAL_04830	Uncharacterized protein. (1994 aa)
	TCAL_12812	Uncharacterized protein. (1059 aa)
	TCAL_01217	SUZ domain-containing protein. (275 aa)
	TCAL_05282	Uncharacterized protein. (2819 aa)
	TCAL_06104	Calponin-homology (CH) domain-containing protein. (1088 aa)
	TCAL_09709	Uncharacterized protein. (754 aa)
	TCAL_05302	TIR domain-containing protein. (932 aa)
	TCAL_05301	TIR domain-containing protein. (918 aa)
	TCAL_11483	WH1 domain-containing protein. (464 aa)
	TCAL_14893	S1 motif domain-containing protein. (741 aa)
	TCAL_05385	Uncharacterized protein. (519 aa)
	TCAL_05391	Uncharacterized protein. (563 aa)
	TCAL_01957	Ig-like domain-containing protein. (1008 aa)
	TCAL_02569	G_PROTEIN_RECEP_F1_2 domain-containing protein. (1348 aa)
	TCAL_01935	Uncharacterized protein. (2654 aa)
	TCAL_03364	Uncharacterized protein. (1027 aa)
	TCAL_01863	Spaetzle domain-containing protein. (409 aa)
	TCAL_01885	Uncharacterized protein. (219 aa)
	TCAL_01908	Uncharacterized protein. (449 aa)
	TCAL_01505	Uncharacterized protein. (248 aa)
	TCAL_05463	Uncharacterized protein. (608 aa)
	TCAL_00658	Chitin-binding type-4 domain-containing protein. (347 aa)
	TCAL_00758	Uncharacterized protein. (521 aa)
	TCAL_15674	Uncharacterized protein. (507 aa)
	TCAL_12660	Uncharacterized protein. (423 aa)
	TCAL_00705	Uncharacterized protein. (836 aa)
	TCAL_07509	Uncharacterized protein. (575 aa)
	TCAL_01637	Uncharacterized protein. (661 aa)
	TCAL_13292	TIR domain-containing protein. (1334 aa)
	TCAL_03867	Uncharacterized protein. (1362 aa)
	TCAL_02020	G_PROTEIN_RECEP_F2_4 domain-containing protein. (669 aa)
	TCAL_13051	TIR domain-containing protein. (1329 aa)
	TCAL_10145	Uncharacterized protein. (280 aa)
	TCAL_03852	G_PROTEIN_RECEP_F2_4 domain-containing protein. (570 aa)
	TCAL_08545	Uncharacterized protein. (335 aa)
	TCAL_04042	G_PROTEIN_RECEP_F2_4 domain-containing protein. (609 aa)
	TCAL_12741	Uncharacterized protein. (1440 aa)
	TCAL_08987	Uncharacterized protein. (1201 aa)
	TCAL_12225	Uncharacterized protein. (1030 aa)
	TCAL_04993	Uncharacterized protein. (1614 aa)
	TCAL_07586	Ig-like domain-containing protein. (190 aa)
	TCAL_07587	Uncharacterized protein. (4069 aa)
	TCAL_06885	Uncharacterized protein. (1083 aa)
	TCAL_10035	Uncharacterized protein. (2268 aa)
	TCAL_10037	Uncharacterized protein. (1017 aa)
	TCAL_01959	Uncharacterized protein. (1535 aa)
	TCAL_13183	CUB domain-containing protein. (582 aa)
	TCAL_16115	VWFD domain-containing protein. (558 aa)
	TCAL_08095	CTCK domain-containing protein. (149 aa)
	TCAL_16787	Spaetzle domain-containing protein. (771 aa)
	TCAL_13247	Spaetzle domain-containing protein. (371 aa)
	TCAL_12035	Uncharacterized protein. (670 aa)
	TCAL_13763	Spaetzle domain-containing protein. (701 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00658	TCAL_00758	A0A553P9Q9	A0A553PA05	Chitin-binding type-4 domain-containing protein.	Uncharacterized protein.	0.485
TCAL_00658	TCAL_02569	A0A553P9Q9	A0A553P6D6	Chitin-binding type-4 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.405
TCAL_00758	TCAL_00658	A0A553PA05	A0A553P9Q9	Uncharacterized protein.	Chitin-binding type-4 domain-containing protein.	0.485
TCAL_00758	TCAL_06863	A0A553PA05	A0A553NEM4	Uncharacterized protein.	Chitin-binding type-4 domain-containing protein.	0.485
TCAL_00758	TCAL_06934	A0A553PA05	A0A553NT50	Uncharacterized protein.	Ig-like domain-containing protein.	0.575
TCAL_00758	TCAL_10035	A0A553PA05	A0A553PNE6	Uncharacterized protein.	Uncharacterized protein.	0.772
TCAL_00758	TCAL_10037	A0A553PA05	A0A553PNG8	Uncharacterized protein.	Uncharacterized protein.	0.710
TCAL_00758	TCAL_10145	A0A553PA05	A0A553PGY5	Uncharacterized protein.	Uncharacterized protein.	0.485
TCAL_00758	TCAL_11548	A0A553PA05	A0A553NXX7	Uncharacterized protein.	Chitin-binding type-4 domain-containing protein.	0.485
TCAL_00758	TCAL_16115	A0A553PA05	A0A553PPX0	Uncharacterized protein.	VWFD domain-containing protein.	0.772
TCAL_00758	TCAL_17255	A0A553PA05	A0A553NXS1	Uncharacterized protein.	Uncharacterized protein.	0.485
TCAL_01217	TCAL_02787	A0A553NZH8	A0A553NXM5	SUZ domain-containing protein.	Uncharacterized protein.	0.815
TCAL_01217	TCAL_03292	A0A553NZH8	A0A553NPB4	SUZ domain-containing protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.992
TCAL_01217	TCAL_04365	A0A553NZH8	A0A553NQ31	SUZ domain-containing protein.	Uncharacterized protein.	0.557
TCAL_01217	TCAL_05187	A0A553NZH8	A0A553NZ63	SUZ domain-containing protein.	Uncharacterized protein.	0.815
TCAL_01217	TCAL_06885	A0A553NZH8	A0A553PMJ6	SUZ domain-containing protein.	Uncharacterized protein.	0.815
TCAL_01217	TCAL_08034	A0A553NZH8	A0A553NND2	SUZ domain-containing protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.815
TCAL_01217	TCAL_09649	A0A553NZH8	A0A553NY31	SUZ domain-containing protein.	Uncharacterized protein.	0.815
TCAL_01217	TCAL_12812	A0A553NZH8	A0A553NZE3	SUZ domain-containing protein.	Uncharacterized protein.	0.815
TCAL_01217	TCAL_12813	A0A553NZH8	A0A553NZ71	SUZ domain-containing protein.	Uncharacterized protein.	0.815