18 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_01480	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family. (273 aa)
	TCAL_09098	Uncharacterized protein. (120 aa)
	TCAL_10348	Uncharacterized protein. (216 aa)
	TCAL_00348	L51_S25_CI-B8 domain-containing protein. (92 aa)
	TCAL_00848	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family. (225 aa)
	TCAL_00807	Uncharacterized protein. (191 aa)
	TCAL_05872	Uncharacterized protein. (269 aa)
	TCAL_05883	Uncharacterized protein. (161 aa)
	TCAL_04131	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (188 aa)
	TCAL_06837	Uncharacterized protein; Belongs to the complex I LYR family. (124 aa)
	TCAL_02370	zf-CHCC domain-containing protein. (121 aa)
	TCAL_01585	Uncharacterized protein. (180 aa)
	TCAL_08370	Uncharacterized protein. (244 aa)
	TCAL_06393	Uncharacterized protein. (160 aa)
	TCAL_03847	Uncharacterized protein. (92 aa)
	TCAL_00157	Uncharacterized protein. (126 aa)
	TCAL_07308	Uncharacterized protein. (196 aa)
	TCAL_12405	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family. (731 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00157	TCAL_00348	A0A553PG97	A0A553NC36	Uncharacterized protein.	L51_S25_CI-B8 domain-containing protein.	0.999
TCAL_00157	TCAL_00807	A0A553PG97	A0A553NFE5	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_00848	A0A553PG97	A0A553NFC5	Uncharacterized protein.	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	0.999
TCAL_00157	TCAL_01480	A0A553PG97	A0A553N6Z3	Uncharacterized protein.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
TCAL_00157	TCAL_01585	A0A553PG97	A0A553P8T8	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_02370	A0A553PG97	A0A553P0F0	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.999
TCAL_00157	TCAL_03847	A0A553PG97	A0A553PFD8	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_04131	A0A553PG97	A0A553NTU6	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
TCAL_00157	TCAL_05872	A0A553PG97	A0A553NNU2	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_05883	A0A553PG97	A0A553NQ23	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_06393	A0A553PG97	A0A553PAV5	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_06837	A0A553PG97	A0A553NTY6	Uncharacterized protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.999
TCAL_00157	TCAL_07308	A0A553PG97	A0A553PH04	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_08370	A0A553PG97	A0A553PAI0	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_09098	A0A553PG97	A0A553N8C3	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_10348	A0A553PG97	A0A553NBQ9	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00157	TCAL_12405	A0A553PG97	A0A553PPF5	Uncharacterized protein.	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	0.999
TCAL_00348	TCAL_00157	A0A553NC36	A0A553PG97	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.999
TCAL_00348	TCAL_00807	A0A553NC36	A0A553NFE5	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.999
TCAL_00348	TCAL_00848	A0A553NC36	A0A553NFC5	L51_S25_CI-B8 domain-containing protein.	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	0.999