12 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_06667	Uncharacterized protein. (153 aa)
	TCAL_04175	Uncharacterized protein. (186 aa)
	TCAL_03319	Uncharacterized protein. (154 aa)
	TCAL_03217	Uncharacterized protein. (105 aa)
	TCAL_16413	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family. (113 aa)
	TCAL_00971	Uncharacterized protein. (88 aa)
	TCAL_07035	Uncharacterized protein. (90 aa)
	TCAL_11611	Uncharacterized protein; Belongs to the peptidase M16 family. (526 aa)
	TCAL_07917	Uncharacterized protein. (456 aa)
	TCAL_07371	Uncharacterized protein. (169 aa)
	TCAL_11193	Uncharacterized protein. (194 aa)
	CYC1	Cytochrome c1. (276 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYC1	TCAL_00971	Q6VBC0	A0A553P7T2	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_03217	Q6VBC0	A0A553NTV3	Cytochrome c1.	Uncharacterized protein.	0.998
CYC1	TCAL_03319	Q6VBC0	A0A553NNL5	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_04175	Q6VBC0	A0A553N837	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_06667	Q6VBC0	A0A553N7S9	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_07035	Q6VBC0	A0A553PAM6	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_07371	Q6VBC0	A0A553PNC9	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_07917	Q6VBC0	A0A553PI78	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_11193	Q6VBC0	A0A553PPI4	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_11611	Q6VBC0	A0A553PBA4	Cytochrome c1.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.999
CYC1	TCAL_16413	Q6VBC0	A0A553P068	Cytochrome c1.	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	0.998
TCAL_00971	CYC1	A0A553P7T2	Q6VBC0	Uncharacterized protein.	Cytochrome c1.	0.999
TCAL_00971	TCAL_03217	A0A553P7T2	A0A553NTV3	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_03319	A0A553P7T2	A0A553NNL5	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_04175	A0A553P7T2	A0A553N837	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_06667	A0A553P7T2	A0A553N7S9	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_07035	A0A553P7T2	A0A553PAM6	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_07371	A0A553P7T2	A0A553PNC9	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_07917	A0A553P7T2	A0A553PI78	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_11193	A0A553P7T2	A0A553PPI4	Uncharacterized protein.	Uncharacterized protein.	0.998