7 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_06667	Uncharacterized protein. (153 aa)
	TCAL_03319	Uncharacterized protein. (154 aa)
	TCAL_03217	Uncharacterized protein. (105 aa)
	TCAL_16413	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family. (113 aa)
	TCAL_00971	Uncharacterized protein. (88 aa)
	TCAL_07035	Uncharacterized protein. (90 aa)
	TCAL_07371	Uncharacterized protein. (169 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00971	TCAL_03217	A0A553P7T2	A0A553NTV3	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_03319	A0A553P7T2	A0A553NNL5	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_06667	A0A553P7T2	A0A553N7S9	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_07035	A0A553P7T2	A0A553PAM6	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_07371	A0A553P7T2	A0A553PNC9	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_00971	TCAL_16413	A0A553P7T2	A0A553P068	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	0.999
TCAL_03217	TCAL_00971	A0A553NTV3	A0A553P7T2	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_03217	TCAL_03319	A0A553NTV3	A0A553NNL5	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_03217	TCAL_06667	A0A553NTV3	A0A553N7S9	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_03217	TCAL_07035	A0A553NTV3	A0A553PAM6	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_03217	TCAL_07371	A0A553NTV3	A0A553PNC9	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_03217	TCAL_16413	A0A553NTV3	A0A553P068	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	0.999
TCAL_03319	TCAL_00971	A0A553NNL5	A0A553P7T2	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_03319	TCAL_03217	A0A553NNL5	A0A553NTV3	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_03319	TCAL_06667	A0A553NNL5	A0A553N7S9	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_03319	TCAL_07035	A0A553NNL5	A0A553PAM6	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_03319	TCAL_07371	A0A553NNL5	A0A553PNC9	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_03319	TCAL_16413	A0A553NNL5	A0A553P068	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	0.999
TCAL_06667	TCAL_00971	A0A553N7S9	A0A553P7T2	Uncharacterized protein.	Uncharacterized protein.	0.999
TCAL_06667	TCAL_03217	A0A553N7S9	A0A553NTV3	Uncharacterized protein.	Uncharacterized protein.	0.999