4 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_06022	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (405 aa)
	TCAL_00900	Protein kinase domain-containing protein. (1233 aa)
	TCAL_01393	Uncharacterized protein. (934 aa)
	TCAL_10078	Uncharacterized protein. (4291 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01393	TCAL_06022	A0A553NUX3	A0A553P7V5	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.573
TCAL_01393	TCAL_10078	A0A553NUX3	A0A553N6Y6	Uncharacterized protein.	Uncharacterized protein.	0.551
TCAL_06022	TCAL_01393	A0A553P7V5	A0A553NUX3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.573
TCAL_06022	TCAL_10078	A0A553P7V5	A0A553N6Y6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.551
TCAL_10078	TCAL_01393	A0A553N6Y6	A0A553NUX3	Uncharacterized protein.	Uncharacterized protein.	0.551
TCAL_10078	TCAL_06022	A0A553N6Y6	A0A553P7V5	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.551